PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.26675s0081.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bHLH

Protein Properties

Length: 227aa MW: 25483 Da PI: 7.2964

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.26675s0081.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38	3e-12	70	116	4	53
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 ++ rE++RRdr+N++f eL ++l + + +K +K++iL A++ +++ Bostr.26675s0081.1.p 70 SKACREKQRRDRLNDKFTELSSILEPG---RLPKTDKVAILNDAIRMLNQ 116 5678********************8...89***********99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.906	66	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.09E-9	69	122	No hit	No description
Pfam	PF00010	6.2E-10	70	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-12	70	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.81E-13	72	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-9	72	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MVSPENTNWL SDYPLIDGAF SDHNPTFPWQ IDGSASVSVE VDGFLCDSDV IKEPGSRKRI 60 KPESCAGSSS KACREKQRRD RLNDKFTELS SILEPGRLPK TDKVAILNDA IRMLNQVRDE 120 AQKLKDLNSS LQEKIKELKD EKNELRDEKQ KLKIEKERIE QQLKAIKTQP QPQPCFLPNP 180 PTLSQAQAPG SKLVPFTTYP GFAMWQFMPP AAVDTSQDHV LRPPVA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.26675s0081.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488632	0.0	AF488632.1 Arabidopsis thaliana clone bHLH115 putative bHLH transcription factor mRNA, complete cds.
GenBank	AY085619	0.0	AY085619.1 Arabidopsis thaliana clone 16284 mRNA, complete sequence.
GenBank	BT002433	0.0	BT002433.1 Arabidopsis thaliana bHLH transcription factor, putative (At1g51070) mRNA, complete cds.
GenBank	BT006273	0.0	BT006273.1 Arabidopsis thaliana At1g51070 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020869711.1	1e-158	transcription factor bHLH115
Swissprot	Q9C682	1e-157	BH115_ARATH; Transcription factor bHLH115
TrEMBL	D7KGW7	1e-157	D7KGW7_ARALL; Basic helix-loop-helix family protein
STRING	Bostr.26675s0081.1.p	1e-166	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1437	28	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51070.1	1e-147	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bostr.26675s0081.1.p

Publications ? help Back to Top
Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511]