PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.26675s0184.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bHLH

Protein Properties

Length: 236aa MW: 25151 Da PI: 6.665

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.26675s0184.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.2	9.3e-06	125	165	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + R ++i +++ L++l+ + +K + a++L +++ YIk Lq Bostr.26675s0184.1.p 125 KVRKEKISERITALQQLVSPY-----GKTDTASVLHETTGYIKFLQ 165 67889************99.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.735	115	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-9	116	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-12	118	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0042	121	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.24E-6	125	169	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MRGTMEAEDG VTNFSDVLLL SNDVLGSSNV GEDSFGFGFT GKDTPQMLCF GGGNQNDAGL 60 LFSEPSFSAA SPISSSNNTC AVDDKSSRSN KKRTGSSNGH DQICDPKSGK KCKGDKKSSV 120 GNATKVRKEK ISERITALQQ LVSPYGKTDT ASVLHETTGY IKFLQDQVQI LSSPYFKHHP 180 LENEDTGDVN PTMKAKELKN NGVCIVPLAW TVHVANTNGA DLWSPAAILS PTMNQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.26675s0184.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_175405.2	1e-120	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Refseq	XP_006306245.1	1e-120	transcription factor bHLH113 isoform X1
Swissprot	Q9LT67	3e-76	BH113_ARATH; Transcription factor bHLH113
TrEMBL	F4I3E6	1e-118	F4I3E6_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
TrEMBL	R0IPP1	1e-119	R0IPP1_9BRAS; Uncharacterized protein
STRING	Bostr.26675s0184.1.p	1e-175	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7402	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	2e-68	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bostr.26675s0184.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]