PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.26675s0224.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Protein Properties

Length: 180aa MW: 20642.4 Da PI: 5.1997

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.26675s0224.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43	7.9e-14	31	120	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ffk+ + ++ k++++ +p +++ + g ++ + +++e++ g + ++++ ++ +++++++kGW+eF++a+ L eg f+ F+++g+s+ Bostr.26675s0224.1.p 31 FFKII-HLSTIKEKIMKVPARYV-RLG--PKLTDNVSVETPVGFKRSIRI--KRIGDEVWFEKGWSEFAEAHSLSEGHFLFFHYEGKSS 113 55655.889999999*****9.555..446679***********..*******************************9999 PP E..EEEEE- CS B3 90 felvvkvfr 98 f +v +++ Bostr.26675s0224.1.p 114 F--RVVICD 120 9..888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.75E-17	26	120	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	7.5E-17	28	120	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.419	30	122	IPR003340	B3 DNA binding domain
SMART	SM01019	6.4E-13	31	122	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.5E-11	31	120	IPR003340	B3 DNA binding domain
CDD	cd10017	4.17E-13	31	120	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MPNTRRSSVR ITSAASQRRL EPEPEPAVNK FFKIIHLSTI KEKIMKVPAR YVRLGPKLTD 60 NVSVETPVGF KRSIRIKRIG DEVWFEKGWS EFAEAHSLSE GHFLFFHYEG KSSFRVVICD 120 VTASEIKYPL DKVYVIESDD DKEEVMEVVD DDEQGFAGFE SSEDEGVIDL DELLKKKKPT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.26675s0224.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007504	9e-73	AC007504.3 Arabidopsis thaliana chromosome I BAC F13F21 genomic sequence, complete sequence.
GenBank	CP002684	9e-73	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010500489.1	1e-107	PREDICTED: B3 domain-containing protein At1g49475-like
Swissprot	Q9XIB4	5e-88	Y1475_ARATH; B3 domain-containing protein At1g49475
TrEMBL	A0A178WDC1	2e-86	A0A178WDC1_ARATH; Uncharacterized protein
STRING	Bostr.26675s0224.1.p	1e-128	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1591	25	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49475.1	9e-82	B3 family protein

Link Out ? help Back to Top
Phytozome	Bostr.26675s0224.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]