PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26675s0256.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ARR-B
Protein Properties Length: 476aa    MW: 54401.5 Da    PI: 5.4797
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26675s0256.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like734.1e-23293350155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktil...elmkvkgLtlehvkSHLQkYRl 55 
                           kpr+ Wt++LH++F+ea+e  GG+ekA Pk +l   + m+++gLt+++v+SHLQk+R+
  Bostr.26675s0256.1.p 293 KPRMTWTEDLHQKFLEAIEIVGGIEKANPKLLLdclQEMEIEGLTRNNVASHLQKHRI 350
                           79****************************9862225699*****************7 PP
2Response_reg60.77.9e-21361431108
                           EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS
          Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 
                           vl+vd + + + +++q++++  y +v+  +d+e+al+ l  +++++++++ D  mpg+dGl++lk+i ++  ++p++++++ ++ e + 
  Bostr.26675s0256.1.p  36 VLVVDTNFTTLLNMKQIMRQYAY-QVTIEADAEKALAFLtsCKHEINIVIWDFHMPGIDGLQALKSIGTKM-NIPVVIMSDDNQTESVM 122
                           89*********************.999999999999999778888**********************7755.8**************** PP

                           HHHHTTESEEEESS--HHHHH CS
          Response_reg  88 ealkaGakdflsKpfdpeelv 108
                           +a   Ga d++ Kp++++ + 
  Bostr.26675s0256.1.p 123 KATIHGACDYVLKPVKEDVIA 143
                           **************9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.7E-2733158IPR011006CheY-like superfamily
SMARTSM004483.1E-1634146IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23009.4E-2934157No hitNo description
PROSITE profilePS5011035.54735150IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.3E-1836143IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.85E-1837149No hitNo description
Gene3DG3DSA:1.10.10.601.4E-21291354IPR009057Homeodomain-like
SuperFamilySSF466893.58E-13291353IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-18293350IPR006447Myb domain, plants
PfamPF002492.3E-6295349IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MLVGNTSKDK VNTRSLQRET SEITSLLKQF PANTNVLVVD TNFTTLLNMK QIMRQYAYQV  60
TIEADAEKAL AFLTSCKHEI NIVIWDFHMP GIDGLQALKS IGTKMNIPVV IMSDDNQTES  120
VMKATIHGAC DYVLKPVKED VIANIWQHIV RKRMMSKPAI IPPVQSDLAQ SSDGLEQGKV  180
DSKIVDQEQN IDKKEERATK RPWITWTGEI QPVQSDLVQI TDLDQHNVYS KTINQDNGEQ  240
NVDKKDEKAA KKPRMIWDEE IQLVQSDLVQ TDGFNKDNSV QKIENKVGKK TRKPRMTWTE  300
DLHQKFLEAI EIVGGIEKAN PKLLLDCLQE MEIEGLTRNN VASHLQKHRI YLEENQIYQQ  360
THEIDWSTAY ETAPSLQGSD NVHTAISSYL MNGRAVNPIQ QNQYQNGYLT MNNNQFITNP  420
LPRLPNFDHH LRQPQQQQYQ SSPQFNYVMS NEEPGQASDI YAPDFELTYP SLPYM*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26675s0256.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869952.10.0LOW QUALITY PROTEIN: putative two-component response regulator ARR19
SwissprotQ9M9B99e-99ARR19_ARATH; Putative two-component response regulator ARR19
TrEMBLD7KE140.0D7KE14_ARALL; Uncharacterized protein
STRINGBostr.26675s0256.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM131371629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49190.11e-130response regulator 19