PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.26675s0262.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

NAC

Protein Properties

Length: 274aa MW: 31237.3 Da PI: 8.425

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.26675s0262.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.2	8.9e-55	5	131	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lp+GfrFhPtdeel+++yL +kv + ++++ ++i ++d++k+ePwdLp+k++ +ekewyfF rd+ky+tg r+nrat++gyWk+tgkd Bostr.26675s0262.1.p 5 LPAGFRFHPTDEELITHYLSRKVLDVDFTA-KAIVDIDLNKSEPWDLPAKASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKD 92 799**********************999.88***********999999******************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ke+++ +g lvg+kktLvfykgrapkgek++Wvmheyrle Bostr.26675s0262.1.p 93 KEIYR-TGILVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 131 *.99****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.11E-63	3	152	IPR003441	NAC domain
PROSITE profile	PS51005	59.639	5	151	IPR003441	NAC domain
Pfam	PF02365	1.7E-28	6	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MEESLPAGFR FHPTDEELIT HYLSRKVLDV DFTAKAIVDI DLNKSEPWDL PAKASMGEKE 60 WYFFNLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIYRTGI LVGMKKTLVF YKGRAPKGEK 120 SNWVMHEYRL ENKQPFKPTK EEWVVCRIFK KNTTTKKPQE QPQSSQPSLE SPCEANSSMV 180 NNEYGDIEFR SHSSANFVDS NHFSHIQSQN GIYLADNINS SACTGLIDMN LNMAATTLPS 240 ISSWSTSLLG QSLSPMDSLL LKAFQIRNSY NFF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-58	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-58	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-58	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-58	4	157	16	171	NO APICAL MERISTEM PROTEIN
4dul_A	2e-58	4	157	16	171	NAC domain-containing protein 19
4dul_B	2e-58	4	157	16	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.26675s0262.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013628782.1	1e-142	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	2e-81	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	V4MH12	1e-180	V4MH12_EUTSA; Uncharacterized protein
STRING	Bostr.26675s0262.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5527	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-132	NAC domain containing protein 58

Link Out ? help Back to Top
Phytozome	Bostr.26675s0262.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]