PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26675s0270.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 315aa    MW: 34413.7 Da    PI: 9.323
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26675s0270.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.93.2e-10754345
                          SS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwq 45
                           W+ eE++ + +a++++  +      +Wk+ a++++ ++tl+++k ++q
  Bostr.26675s0270.1.p  7 TWSREEEKAFENAIALHCVEeeitedQWKKMASMVP-TKTLEEVKKHYQ 54
                          5****************999****************.***********9 PP
2Myb_DNA-binding39.51.3e-12134178347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  Bostr.26675s0270.1.p 134 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 178
                           8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.319361IPR017884SANT domain
SMARTSM007171.9E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-5758IPR009057Homeodomain-like
PfamPF002491.3E-7754IPR001005SANT/Myb domain
CDDcd001679.92E-9757No hitNo description
SuperFamilySSF466898.97E-10864IPR009057Homeodomain-like
PROSITE profilePS5129417.939127183IPR017930Myb domain
SuperFamilySSF466897.59E-17129184IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-11131177IPR009057Homeodomain-like
SMARTSM007172.5E-11131181IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.9E-17131181IPR006447Myb domain, plants
CDDcd001671.13E-9134179No hitNo description
PfamPF002494.4E-11134178IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MESVVATWSR EEEKAFENAI ALHCVEEEIT EDQWKKMASM VPTKTLEEVK KHYQILLEDV  60
NAIENGQVPL PRYHHRKGLI VDEAATSPAS RDSHSSGSSE KKPNPGTSGI SSSNGGGGRS  120
GGSRAEQERR KGVPWTEEEH RLFLLGLDKF GKGDWRSISR NFVISRTPTQ VASHAQKYFI  180
RLNSMNRDRR RSSIHDITTV NNQAPAVTGG GQQQVVKHRP AQPQPQPHSQ PQPQPHHPPT  240
MAGLGMYGGA PVGQPIIAPH DHMGSAVGTP VMLPPPMGTH HHHHHLPLGV APYAVPAYPV  300
PPLPQQHPAP STLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-138781178RADIALIS
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26675s0270.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0869060.0AY086906.1 Arabidopsis thaliana clone 29302 mRNA, complete sequence.
GenBankAY5195280.0AY519528.1 Arabidopsis thaliana MYB transcription factor (At1g49010) mRNA, complete cds.
GenBankBT0248620.0BT024862.1 Arabidopsis thaliana At1g49010 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_564537.11e-178Duplicated homeodomain-like superfamily protein
TrEMBLQ9M9A31e-177Q9M9A3_ARATH; At1g49010
STRINGBostr.26675s0270.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103042535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.11e-148MYB family protein