PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.26675s0309.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

C2H2

Protein Properties

Length: 160aa MW: 18051.6 Da PI: 10.1813

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.26675s0309.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00062	8	26	2	20
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 +C+ C+++F ++ +L +H Bostr.26675s0309.1.p 8 ECGVCKRVFLSSQHLISHF 26 6*****************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.954	7	35	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	9	30	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MPFSKPQECG VCKRVFLSSQ HLISHFDAVH SNRHFSTFSS PAAAAPTTFR YYQNLNRNPN 60 PGFQARTHLD YYRRGYFDDQ GKFRKGLPPA PAITPARKYK FLLPKISKMP KLMDLFPETS 120 SEGIRTLPLL CQLEQRRAED TVTENGGANS SSIDLSLRL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.26675s0309.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP002684	8e-76	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F19P19	8e-76	AC000104.1 Sequence of BAC F19P19 from Arabidopsis thaliana chromosome 1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010462555.1	6e-84	PREDICTED: uncharacterized protein LOC104743140
TrEMBL	R0GLU4	5e-76	R0GLU4_9BRAS; Uncharacterized protein
STRING	Bostr.26675s0309.1.p	1e-115	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13551	13	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04445.1	5e-68	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Bostr.26675s0309.1.p