PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26675s0388.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 187aa    MW: 20079.3 Da    PI: 4.7164
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26675s0388.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-192574255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          +y+GVr ++ +g+++AeIrdp++   + r +lg+f+tae+Aa+a++ a+++++g
  Bostr.26675s0388.1.p 25 HYRGVRKRP-WGKYAAEIRDPRK---KNRLWLGTFDTAEDAARAYDSAAREFRG 74
                          6********.**********854...59***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.63E-322582No hitNo description
SMARTSM003806.6E-372588IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-222583IPR016177DNA-binding domain
PROSITE profilePS5103224.2632582IPR001471AP2/ERF domain
PfamPF008479.3E-132574IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-322582IPR001471AP2/ERF domain
PRINTSPR003672.9E-112637IPR001471AP2/ERF domain
PRINTSPR003672.9E-114864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MTPHEQENVT NAAVKDGGGK SEEVHYRGVR KRPWGKYAAE IRDPRKKNRL WLGTFDTAED  60
AARAYDSAAR EFRGSKATTN FPLAGDGGNA SATSVNSTLS ATERERIFSS GCQNVLSPAV  120
AEAVAGFLLD LPEATELREE LDRVCPVRFE PNDLGLCIGL QTAVEVEPEA SSAVDCKLNL  180
DLNLGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-242588569ATERF1
3gcc_A8e-242588569ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00124DAPTransfer from AT1G03800Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26675s0388.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010482529.11e-79PREDICTED: ethylene-responsive transcription factor 10-like
SwissprotQ9ZWA21e-76ERF77_ARATH; Ethylene-responsive transcription factor 10
TrEMBLA0A384KN673e-74A0A384KN67_ARATH; ERF10
TrEMBLQ08A593e-74Q08A59_ARATH; At1g03800
STRINGBostr.26675s0388.1.p1e-134(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.13e-70ERF domain protein 10
Publications ? help Back to Top
  1. Lehmeyer M, et al.
    Functional dissection of a strong and specific microbe-associated molecular pattern-responsive synthetic promoter.
    Plant Biotechnol. J., 2016. 14(1): p. 61-71
    [PMID:25819608]