PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0022.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 24191.8 Da    PI: 9.9977
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.31.2e-29959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          k+ien + rqvtfskRrng+lKKA+ELSvLCda++++iifs++g+lye+ss
  Bostr.26833s0022.1.p  9 KKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQISLIIFSQRGRLYEFSS 59
                          68***********************************************96 PP
2K-box66.68.9e-2380170797
                 K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                           ++ +e   ++l++e++ +  +i  L+  +R+llG+++ s+sl eLq++ +qL++sl k+R++K +l++eq+e+l+ kek+l een +L+
  Bostr.26833s0022.1.p  80 NHDTEIYLQQLKHEASHMITKIGLLEVYKRKLLGQGIASCSLGELQEIDSQLQRSLGKVRTRKAQLFTEQVEKLKAKEKQLLEENVKLH 168
                           335666789******************************************************************************** PP

                 K-box  96 kk 97 
                           +k
  Bostr.26833s0022.1.p 169 QK 170
                           98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.296161IPR002100Transcription factor, MADS-box
CDDcd002651.35E-43376No hitNo description
SuperFamilySSF554551.44E-32381IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.22287177IPR002487Transcription factor, K-box
PfamPF014867.3E-2287170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009838Biological Processabscission
GO:0009909Biological Processregulation of flower development
GO:0010150Biological Processleaf senescence
GO:0080187Biological Processfloral organ senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVRGKIEVKK IENATSRQVT FSKRRNGLLK KAYELSVLCD AQISLIIFSQ RGRLYEFSSS  60
DMQKTIERYR KYTKDHGTSN HDTEIYLQQL KHEASHMITK IGLLEVYKRK LLGQGIASCS  120
LGELQEIDSQ LQRSLGKVRT RKAQLFTEQV EKLKAKEKQL LEENVKLHQK NVIDPWRGSN  180
DQQEKYRVID LNLDAETDLF IGLPNRHC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-21191189Myocyte-specific enhancer factor 2B
1tqe_Q1e-21191189Myocyte-specific enhancer factor 2B
1tqe_R1e-21191189Myocyte-specific enhancer factor 2B
1tqe_S1e-21191189Myocyte-specific enhancer factor 2B
6c9l_A1e-21191189Myocyte-specific enhancer factor 2B
6c9l_B1e-21191189Myocyte-specific enhancer factor 2B
6c9l_C1e-21191189Myocyte-specific enhancer factor 2B
6c9l_D1e-21191189Myocyte-specific enhancer factor 2B
6c9l_E1e-21191189Myocyte-specific enhancer factor 2B
6c9l_F1e-21191189Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00576DAPTransfer from AT5G62165Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26833s0022.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0542200.0AY054220.1 Arabidopsis thaliana At2g45660/F17K2.19 mRNA, complete cds.
GenBankAY0652060.0AY065206.1 Arabidopsis thaliana unknown protein (At5g62165) mRNA, complete cds.
GenBankAY0660350.0AY066035.1 Arabidopsis thaliana At2g45660/F17K2.19 mRNA, complete cds.
GenBankAY0965090.0AY096509.1 Arabidopsis thaliana unknown protein (At5g62165) mRNA, complete cds.
GenBankAY1412130.0AY141213.1 Arabidopsis thaliana MADS-box protein AGL42 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010458334.11e-135PREDICTED: MADS-box protein AGL42
RefseqXP_010458343.11e-135PREDICTED: MADS-box protein AGL42
SwissprotQ9FIS11e-134AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A1J3H2031e-132A0A1J3H203_NOCCA; MADS-box protein SOC1
STRINGBostr.26833s0022.1.p1e-152(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.31e-126AGAMOUS-like 42