PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0090.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 285aa    MW: 32049.7 Da    PI: 6.5097
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.7e-051031223
                          EETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                          +C+ C+ksFs+   L  H+++H
  Bostr.26833s0090.1.p 10 TCQVCKKSFSNGKALGGHMKSH 31
                          6*******************99 PP
2zf-C2H211.80.00075255277123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y+C++C+++F +   L  H ++H
  Bostr.26833s0090.1.p 255 YECQICNRVFESGQALGGHKKVH 277
                           99**********99999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.972936IPR007087Zinc finger, C2H2
SMARTSM003550.14931IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.07E-71031No hitNo description
PfamPF139122.0E-81132IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576671.07E-7209236No hitNo description
PROSITE profilePS5015710.242214241IPR007087Zinc finger, C2H2
PfamPF139122.2E-10214237IPR007087Zinc finger, C2H2
SMARTSM003550.19214236IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280216236IPR007087Zinc finger, C2H2
SuperFamilySSF576672.24E-5253278No hitNo description
PfamPF139128.8E-12254278IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.408255277IPR007087Zinc finger, C2H2
SMARTSM003550.028255277IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280257277IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MYSLLNQTKT CQVCKKSFSN GKALGGHMKS HTRKLSAELS TGSITPSLRP RNNLGANFRP  60
HETVLMRSVH TNEAVGGRTP DLNKEGEQQK TAAKRKIVID LEDITIEQSA LCLLHMKGMW  120
SESCQNPKSI DSLVSTRKGK DTEEYIEIDS EEDDEDSDDE YVVEDEDNED GDIKFLTSDV  180
GYLTADSDED DNNYADENAY YGTKERRGKK QSKYMCDICG KVLRSYQALG GHRTSHRNKR  240
LKLSDKDGPV VRRHYECQIC NRVFESGQAL GGHKKVHYAF LQPT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26833s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168871e-122AB016887.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCI2.
GenBankAB4938061e-122AB493806.1 Arabidopsis thaliana At5g61470 gene for hypothetical protein, partial cds, clone: RAAt5g61470.
GenBankCP0026881e-122CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006279551.11e-151zinc finger protein ZAT9
TrEMBLR0G7H61e-149R0G7H6_9BRAS; Uncharacterized protein
STRINGBostr.26833s0090.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141711523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61470.11e-97C2H2-like zinc finger protein