PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0191.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ZF-HD
Protein Properties Length: 117aa    MW: 13189.3 Da    PI: 9.9386
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0191.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer96.81.7e-30258358
           ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                           v Y+eClkNhA+sl gha+DGCgEf+p++++  +++ +l+C ACgCHRnFHRr+++
  Bostr.26833s0191.1.p  2 VVLYNECLKNHAVSLCGHALDGCGEFIPKSTTIlTHPPSLRCDACGCHRNFHRRSPS 58
                          589**************************99999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-30166IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.2E-25356IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.974556IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.8E-30556IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.73E-759114IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-1262114IPR009057Homeodomain-like
TIGRFAMsTIGR015659.1E-1970113IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MVVLYNECLK NHAVSLCGHA LDGCGEFIPK STTILTHPPS LRCDACGCHR NFHRRSPSDV  60
FSHYRSAMMK KHKRTKFTAE QKKKMRGFAE RAGSKINGWD EKWVKEFCGE VGMRSG*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26833s0191.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114834e-77AB011483.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUF9.
GenBankCP0026884e-77CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_200856.21e-62homeobox protein 26
RefseqXP_006282138.13e-63zinc-finger homeodomain protein 12
SwissprotQ9FKJ91e-63ZHD12_ARATH; Zinc-finger homeodomain protein 12
TrEMBLA0A178UPU61e-61A0A178UPU6_ARATH; ZHD12
TrEMBLR0F1A87e-62R0F1A8_9BRAS; Uncharacterized protein
STRINGBostr.26833s0191.1.p5e-83(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51662549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60480.17e-66homeobox protein 26