PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0356.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 290aa    MW: 31551.2 Da    PI: 7.1967
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0356.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-14143187347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Bostr.26833s0356.1.p 143 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 187
                           8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.3713186IPR017884SANT domain
SMARTSM007171.9E-73284IPR001005SANT/Myb domain
SuperFamilySSF466895.1E-103588IPR009057Homeodomain-like
CDDcd001675.10E-73581No hitNo description
PROSITE profilePS5129420.772136192IPR017930Myb domain
SuperFamilySSF466896.89E-17138191IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-17139191IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.2E-12140187IPR009057Homeodomain-like
SMARTSM007173.2E-13140190IPR001005SANT/Myb domain
CDDcd001671.84E-11143188No hitNo description
PfamPF002495.0E-13143187IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEVLRPTTSH VSGGNWLMEE TRSNAAVAAS GEGATWTAAE NKAFENALAV YDDNTPDRWQ  60
KVAAVIPGKT VSDVIRQYND LEADVSSIEA GLIPVPGYIT SPFTLDWAGG GGGCNGFKPG  120
HSVCNKRSPA GRSPELERKK GVPWTEEEHK LFLMGLKKYG KGDWRNISRN FVITRTPTQV  180
ASHAQKYFIR QLSGGKDKRR ASIHDITTVN LEDEASLESN KSSIVVGEQR SRLTAFPWNQ  240
MDKNGTHADA FNITIGNAIS GVHSYGQVLL GGFNNADSCY DAQNTMFQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-1828101376RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00568DAPTransfer from AT5G58900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26833s0356.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1188910.0AK118891.1 Arabidopsis thaliana At5g58900 mRNA for putative I-box binding factor, complete cds, clone: RAFL21-22-M07.
GenBankAY5195330.0AY519533.1 Arabidopsis thaliana MYB transcription factor (At5g58900) mRNA, complete cds.
GenBankBT0054730.0BT005473.1 Arabidopsis thaliana clone U51211 putative I-box binding factor (At5g58900) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869590.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-104DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLD7MR440.0D7MR44_ARALL; Myb family transcription factor
STRINGBostr.26833s0356.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122827100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.10.0Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]