PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0424.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 234aa    MW: 26922 Da    PI: 9.1544
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0424.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.85.9e-111151751890
                           --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                    B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                           lp +f+ +        ++++lede+g+++e  +i r++     l++GWk+F  +++L++gD ++F+l++ ++f
  Bostr.26833s0424.1.p 115 LPSRFCVD--------VQVVLEDEEGEEYEAVYIGRRSA----LSGGWKRFGLDHKLDDGDALLFELVEPKRF 175
                           66666633........359**************544444....9**********************9976666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.8E-6101184IPR003340B3 DNA binding domain
PfamPF023622.5E-8116175IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-10121182IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.6E-9123176IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.248124183IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MAYEEARKLR LEENHKRFQV PFIVTTHCSN MNLRRSRHNS SWASYIARPL HECKFSSYEE  60
KVGVLKAAEE FQSRLESPQP FLCEIYDSLP RLQLLLAGTI FVLTYMGLLA ISKGLPSRFC  120
VDVQVVLEDE EGEEYEAVYI GRRSALSGGW KRFGLDHKLD DGDALLFELV EPKRFKGMYA  180
CSTKSHVVGI YVFRGNENAN LTSAGKRCKV KKKIRMLKNQ LMKETAQPQR DHPQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208214KVKKKIR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26833s0424.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020878363.12e-67putative B3 domain-containing protein At5g58280 isoform X2
SwissprotQ9FHB24e-66Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBLD7MPM51e-67D7MPM5_ARALL; Predicted protein
STRINGBostr.26833s0424.1.p1e-175(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM161411214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.14e-63B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]