PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0491.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 184aa    MW: 21698.7 Da    PI: 7.1614
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0491.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.48.6e-1781354127
                   NAM   4 GfrFhPtdeelvveyLkkkvegkklel..eevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratk....sgyWk 84 
                           ++rF Ptd e+   +L +k++    e+  ++ i+  d y+++P +  k  +++   +++++F++r + +++++++nra++     g W+
  Bostr.26833s0491.1.p   8 CVRFAPTDIEIFETFLIPKLALPVDEVlpDSLIHLYDFYQHDPVTSAKpgSLYFPADNYWYFVTRTRLNPRSTKPNRAIRtnpvLGKWR 96 
                           68*****************99877444213569999*******99863344444445555677778889999*****866557789*** PP

                   NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                           + gk++++++ +  +  l++t+ +    +++  kt W m+ey+
  Bostr.26833s0491.1.p  97 KVGKTERIVN-GMVNLRLRHTFDYV---NQQNLKTGWRMNEYE 135
                           **********.9999*********9...344469********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.935154IPR003441NAC domain
SuperFamilySSF1019411.12E-178154IPR003441NAC domain
PfamPF023659.8E-129135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEEQRWLCVR FAPTDIEIFE TFLIPKLALP VDEVLPDSLI HLYDFYQHDP VTSAKPGSLY  60
FPADNYWYFV TRTRLNPRST KPNRAIRTNP VLGKWRKVGK TERIVNGMVN LRLRHTFDYV  120
NQQNLKTGWR MNEYERAAVG NAFQSMVVVH LVYKRNLDQT LHDQDLHDQQ NFEDIFNDLL  180
ENV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26833s0491.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865962.22e-74uncharacterized protein LOC9300309 isoform X1
RefseqXP_020869287.19e-75uncharacterized protein LOC9300309 isoform X4
RefseqXP_020869291.19e-75uncharacterized protein LOC9300309 isoform X5
RefseqXP_020869302.15e-75uncharacterized protein LOC9300309 isoform X6
RefseqXP_020869311.15e-75uncharacterized protein LOC9300309 isoform X7
TrEMBLD7MSW33e-74D7MSW3_ARALL; Uncharacterized protein
STRINGBostr.26833s0491.1.p1e-135(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1744279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.17e-09NAC-like, activated by AP3/PI