PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.26833s0565.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bHLH

Protein Properties

Length: 513aa MW: 57837.5 Da PI: 9.1158

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.26833s0565.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.7	3.8e-12	338	384	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h + Er+RR+++N++f+ Lr+llP+ +K +Ka++L+ A e ++sLq Bostr.26833s0565.1.p 338 NHMISERKRREKLNESFQALRSLLPPG-----TKKDKASVLTIAREQLSSLQ 384 68899******************97.....8*************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.1E-15	332	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.939	334	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.76E-11	336	388	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.7E-13	337	398	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-9	338	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.5E-13	340	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence Send to blast
MDAFFLTDDP NTRKQFIGSL AQAFGCVYVC LWSYYFPRPS NYLISMDGYY YEASEEPSSS 60 SGNLARSLFL EYRQSVIPLQ NGHVPSMAFM NNLPYVEIRP QEIQRLAYND AQRLFYQTVI 120 FMGCRSGEIE LGMTYDAANM KIEASLREWF PEDFNRNSSP VDSDYLRPSH HPSSSSSSLS 180 PNKVSEYSSL LSPLIPKPST TTDAVNAPVH PLLAPINMIH QQQQEPLFRN REREEEAMTQ 240 AILAVLTRPS SSPPSTSSSP LRKGRATAFK RYYCMISGGG RALPPSVRKQ SMMKRAISFY 300 NRLNIHRRER FATTGGDGNG GSGGGGRYTS GPSATQLNHM ISERKRREKL NESFQALRSL 360 LPPGTKKDKA SVLTIAREQL SSLQGEISKL LERNREAKLA GEREIENDLQ PDERFNIRIR 420 HIPESTSRET ILDLRVVLRG DIIRVDDLMI RLLEFLKQIN NVSLVSIEAR TRARADGDSS 480 VVLVNLRLRI EGEWDESAFQ EAVRRVVADL AH*

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence Send to blast

MDAFFLTDDP NTRKQFIGSL AQAFGCVYVC LWSYYFPRPS NYLISMDGYY YEASEEPSSS  60
SGNLARSLFL EYRQSVIPLQ NGHVPSMAFM NNLPYVEIRP QEIQRLAYND AQRLFYQTVI  120
FMGCRSGEIE LGMTYDAANM KIEASLREWF PEDFNRNSSP VDSDYLRPSH HPSSSSSSLS  180
PNKVSEYSSL LSPLIPKPST TTDAVNAPVH PLLAPINMIH QQQQEPLFRN REREEEAMTQ  240
AILAVLTRPS SSPPSTSSSP LRKGRATAFK RYYCMISGGG RALPPSVRKQ SMMKRAISFY  300
NRLNIHRRER FATTGGDGNG GSGGGGRYTS GPSATQLNHM ISERKRREKL NESFQALRSL  360
LPPGTKKDKA SVLTIAREQL SSLQGEISKL LERNREAKLA GEREIENDLQ PDERFNIRIR  420
HIPESTSRET ILDLRVVLRG DIIRVDDLMI RLLEFLKQIN NVSLVSIEAR TRARADGDSS  480
VVLVNLRLRI EGEWDESAFQ EAVRRVVADL AH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	342	347	ERKRRE
2	343	348	RKRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.26833s0565.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB024035	0.0	AB024035.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010483181.1	0.0	PREDICTED: putative transcription factor bHLH041
Swissprot	Q9LTS4	0.0	BH041_ARATH; Putative transcription factor bHLH041
TrEMBL	A0A1P8BAL1	0.0	A0A1P8BAL1_ARATH; Basic helix-loop-helix (BHLH) DNA-binding family protein
STRING	Bostr.26833s0565.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7060	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bostr.26833s0565.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]