PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0636.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 690aa    MW: 74557.1 Da    PI: 6.2124
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0636.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.31.2e-31271328260
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                           +DgynWrKYGqK vkgse+prsYY+Ct ++C+vkkkvers+ +++++ei+Y+g Hnh+k
  Bostr.26833s0636.1.p 271 EDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSR-EGHITEIIYKGAHNHSK 328
                           8****************************************.***************85 PP
2WRKY103.89.2e-33489547159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+Hnh+
  Bostr.26833s0636.1.p 489 LDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHD 547
                           59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-28263329IPR003657WRKY domain
SuperFamilySSF1182903.79E-25268329IPR003657WRKY domain
SMARTSM007741.6E-34270328IPR003657WRKY domain
PROSITE profilePS5081123.25271329IPR003657WRKY domain
PfamPF031065.9E-24271326IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-36474549IPR003657WRKY domain
SuperFamilySSF1182901.57E-28481549IPR003657WRKY domain
PROSITE profilePS5081138.136484549IPR003657WRKY domain
SMARTSM007741.8E-37489548IPR003657WRKY domain
PfamPF031068.9E-25490547IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MAGFDENVAV MGEWVPRSPS PGTLFSSAIG EGKSSKRVLE RELSLNHGQV IGLEEDTTGN  60
HNKDSSQTNV SRGGLSERIA ARAGFNAPRL NTENIRSNTD FSIDSSLRSP CLTISSPGLS  120
PATLLESPVF LSNPLAQPSP TTGKFPFLPG VNSNALSSDK AKNELFDDIG ASFTFHPVSR  180
SSSSFFQGTT EMMSVDYGNY NNRSSHQSAE DVKPSSQNIE SSNLYGIETD PIGQNKTSDA  240
TTNNGLETVD HQEEEEDQRR GDSMVGGAPA EDGYNWRKYG QKLVKGSEYP RSYYKCTNPN  300
CQVKKKVERS REGHITEIIY KGAHNHSKPP PNRRSGMQID GTEQVEQQQQ QQQQQQRDSA  360
ATWVSCNNTQ QQGGSNENNV EEGSTGFEYG NQSGSIIAQT GGQFESGDAV VVVDASSTFS  420
NDEDEDDRGT HGSVSLGYDG GGGGGGGEGD ESESKRRKLE AYAAEMSGAT RAIREPRVVV  480
QTTSDVDILD DGYRWRKYGQ KVVKGNPNPR SYYKCTAPGC TVRKHVERAS HDLKSVITTY  540
EGKHNHDVPA ARNSSHGGGG SGNGNSGGSA AQSHHYHNGH HSEPSRGRFD RQVTTTNQSP  600
YGHPFSFQPH LGPPSGFSFG LGQTGLANLS MPGLAFDQRK MPGLPHPYLT QPVGMSEAMM  660
QRGMEPKVEP VSDSGQSVYN QIMSRLPQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-37271550878Probable WRKY transcription factor 4
2lex_A4e-37271550878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26833s0636.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4183080.0AF418308.1 Arabidopsis thaliana WRKY transcription factor 2 (WRKY2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864443.10.0probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLD7ML960.0D7ML96_ARALL; Uncharacterized protein
STRINGBostr.26833s0636.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79542740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]