PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0643.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 465aa    MW: 52128.9 Da    PI: 4.7734
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0643.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.001186108123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           + C  Cgk+F++   L  H r H
  Bostr.26833s0643.1.p  86 HICCECGKRFKSGKALGGHKRIH 108
                           68*****************9998 PP
2zf-C2H210.90.0015139159323
                           ETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                           C  C k F++   L  H+r H
  Bostr.26833s0643.1.p 139 CCVCYKKFTSMKALYGHMRFH 159
                           *******************99 PP
3zf-C2H211.40.001346368123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C  C+ksFs+   L  H  +H
  Bostr.26833s0643.1.p 346 HVCVTCNKSFSSYQALGGHRASH 368
                           79***********9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.2E-580109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.87E-884159No hitNo description
SMARTSM003550.1986108IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.15786113IPR007087Zinc finger, C2H2
PfamPF139122.2E-786108IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
PROSITE profilePS501578.725137159IPR007087Zinc finger, C2H2
SMARTSM003554.6137159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
PfamPF139120.003139160IPR007087Zinc finger, C2H2
SMARTSM003550.38346368IPR015880Zinc finger, C2H2-like
PfamPF139122.7E-10346370IPR007087Zinc finger, C2H2
PROSITE profilePS501579.577346373IPR007087Zinc finger, C2H2
PROSITE patternPS000280348368IPR007087Zinc finger, C2H2
PfamPF139122.0E-4395407IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MEHLRGYKTN CQFSLERPRF GSIKVKIPRI QPFIAEEGKE VEEDDEAKSI GLEEEEEEDD  60
HEAKSMDLEE GDLEEEEEEE EEEKKHICCE CGKRFKSGKA LGGHKRIHAL ETRKFSMVRP  120
KMVSGMVGRS ERGELEVACC VCYKKFTSMK ALYGHMRFHP DRGWKGVLPP PLPHPLGNSS  180
SSTLSIDDHD DERMSTDYDD DDFDDDDDDD ENSELWDNNN LELENVVDLK ESFKGWSIRG  240
KRGRRCVLKV DVSDLKEPPP EDMKDINDTN GLLFLATTAE AAANLNVAET TASHSVEEKY  300
LEIAKKRKKK KKRLSEMEKE SSSTHDHQLE VVVAAEEGGA GVREKHVCVT CNKSFSSYQA  360
LGGHRASHNK VKILENHQPR ANAEASLLGT EAIVTGQALG GHKRCHWTGP VSTEAATAAP  420
TAPAGASFSQ ATETMQEVKK LQRTFLEFDL NELPPNEDEE EERV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304308KKRKK
2304312KKRKKKKKR
3306312RKKKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26833s0643.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0230290.0AB023029.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24C1.
GenBankAB4937940.0AB493794.1 Arabidopsis thaliana At5g56200 gene for hypothetical protein, partial cds, clone: RAAt5g56200.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280373.10.0zinc finger protein ZAT4
TrEMBLR0EWN00.0R0EWN0_9BRAS; Uncharacterized protein
STRINGBostr.26833s0643.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-141C2H2 family protein