PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0701.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 566aa    MW: 62615.8 Da    PI: 6.9862
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0701.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.7e-31204261260
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                           dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d+ ++ei+Y+g+H+h+k
  Bostr.26833s0701.1.p 204 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGLITEIIYKGTHDHPK 261
                           8****************************************.***************85 PP
2WRKY106.31.6e-33375433159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  Bostr.26833s0701.1.p 375 LDDGYRWRKYGQKVVRGNPNPRSYYKCTATGCPVRKHVERASHDPKAVITTYEGKHNHD 433
                           59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.204198262IPR003657WRKY domain
SuperFamilySSF1182909.29E-25201262IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-26202262IPR003657WRKY domain
SMARTSM007742.6E-34203261IPR003657WRKY domain
PfamPF031063.4E-24204260IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-37360435IPR003657WRKY domain
SuperFamilySSF1182902.35E-29367435IPR003657WRKY domain
PROSITE profilePS5081138.664370435IPR003657WRKY domain
SMARTSM007748.6E-39375434IPR003657WRKY domain
PfamPF031065.2E-26376433IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MDPDVSNLKE FRVDPETRRD SADCGAGGGG ARYKLMSPAK LPISRSTCIT IPPGLSPTSF  60
LESPVLLSNI KAEPSPTTGS LFKPQAVHAN SSSYTGRTIH QNIFEDQKSS EFEFRPPASN  120
MFYAELDKHR SESPLQFQSQ GHSLKYSPSS LTQAAASSTE ISRQTVPQQT TPSVSDIPER  180
SDPDESVQQS QNDSRGSAPS ILADDGYNWR KYGQKHVKGS EFPRSYYKCT HPNCEVKKLF  240
ERSHDGLITE IIYKGTHDHP KPQPSRRNSG GLVLPAQEER LDKYSSLNAP DEKGSSFYNL  300
SPPVEQNGNP DVSPVSANDD GGDVAMSNRN NDDMDDNDPF SKRRRLDGAM EITPLVKPIR  360
EPRVVVQTLS EVDILDDGYR WRKYGQKVVR GNPNPRSYYK CTATGCPVRK HVERASHDPK  420
AVITTYEGKH NHDVPTTRSN NHNNNNHDIS VPRFRPEETT DTISLDLGVG IASVGPDHTS  480
NEHPHPHQQQ QHIRSEFIHQ TQTNGAAGFR FVHGPPMGSY YGNSLNAGIN HQYNGSREIA  540
HEAQTGDISS SYPYPHNIGR IQSGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36202435877Probable WRKY transcription factor 4
2lex_A2e-36202435877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1341345KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26833s0701.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281806.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLR0GDB80.0R0GDB8_9BRAS; Uncharacterized protein
STRINGBostr.26833s0701.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein