PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.26833s0978.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Nin-like

Protein Properties

Length: 231aa MW: 26968.6 Da PI: 7.0331

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.26833s0978.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.1	2.7e-26	119	169	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++++++++++F+ pi +AAkeL+v+lTvLK++CR++GI RWPhRk+ksl Bostr.26833s0978.1.p 119 QDKLEMSEIRQFFDRPIMKAAKELNVGLTVLKKRCRELGIYRWPHRKLKSL 169 6799*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.11	105	190	IPR003035	RWP-RK domain
Pfam	PF02042	1.0E-21	122	169	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MDHNSLPQLD YPKIENQYDP DSLYDMLEKL PPLESLLDTE DLKPNGGLHF QFQYNSFEDF 60 FDNIEVNNII GSDIHMLTQE PYISSGSSSP CAVQNDSFSS NERCEKRTVK KRNVKKKRQD 120 KLEMSEIRQF FDRPIMKAAK ELNVGLTVLK KRCRELGIYR WPHRKLKSLN SLIKNLQSVG 180 MEEEVKNLEE HRVLIEQEPD AELTDGTKKL RQACFKANYK RRKSLADDYY *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.26833s0978.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002865951.2	1e-142	protein RKD4
Swissprot	Q9LVU8	1e-126	RKD4_ARATH; Protein RKD4
TrEMBL	D7MSC7	1e-141	D7MSC7_ARALL; RWP-RK domain-containing protein
STRING	Bostr.26833s0978.1.p	1e-171	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12585	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	1e-117	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Bostr.26833s0978.1.p

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]