PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26959s0063.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 292aa    MW: 33911.8 Da    PI: 5.2104
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26959s0063.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.5e-172168148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+WT eEd ll +++   G g+W+ +a++ g++Rt+k+c++rw++yl
  Bostr.26959s0063.1.p 21 RGPWTLEEDTLLTNYILHNGEGRWNHVAKCAGLKRTGKSCRLRWLNYL 68
                          89********************************************97 PP
2Myb_DNA-binding50.74.2e-1674117146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg  T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Bostr.26959s0063.1.p  74 RGDLTPQEQLLILELHSKWGNR-WSKIAQYLP-GRTDNEIKNYWRT 117
                           6778******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6081668IPR017930Myb domain
SuperFamilySSF466893.39E-3018115IPR009057Homeodomain-like
SMARTSM007176.3E-142070IPR001005SANT/Myb domain
PfamPF002492.8E-152168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-212275IPR009057Homeodomain-like
CDDcd001674.78E-102368No hitNo description
PROSITE profilePS5129425.06869123IPR017930Myb domain
SMARTSM007172.8E-1473121IPR001005SANT/Myb domain
PfamPF002492.8E-1574117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2276122IPR009057Homeodomain-like
CDDcd001672.34E-1178117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MENSMKKKSF IKESEDVELR RGPWTLEEDT LLTNYILHNG EGRWNHVAKC AGLKRTGKSC  60
RLRWLNYLKP DIRRGDLTPQ EQLLILELHS KWGNRWSKIA QYLPGRTDNE IKNYWRTRVQ  120
KQARQLNIES NSDKFFDAVR SFWVPRLIEK MEQNSSTTTY CCLQNNNNNN FLLLPSQSQD  180
SMMSIQKDTD FLGQNLSFSN MDGSTSTSTF MSNPTTVPHF MDHNNTNIID GSMCFHEGND  240
QEFGGYVPGM DDYMGNSDIS MECHVADGYS AYEDVTQDPM WNMDDIWQFR E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-241812324128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26959s0063.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195680.0AY519568.1 Arabidopsis thaliana MYB transcription factor (At1g68320) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010511820.10.0PREDICTED: transcription factor MYB21-like
SwissprotQ9C9G70.0MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A178WLK61e-179A0A178WLK6_ARATH; MYB62
STRINGBostr.26959s0063.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.10.0myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]