PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.26959s0069.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bHLH

Protein Properties

Length: 146aa MW: 16495.4 Da PI: 6.5459

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.26959s0069.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.2	4e-05	118	140	4	26
HHHHHHHHHHHHHHHHHHHHHCT CS HLH 4 ahnerErrRRdriNsafeeLrel 26 + n +E+rRR +++++e+L+el Bostr.26959s0069.1.p 118 SRNSNEKRRRTGLRTKIETLKEL 140 789******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MNMDYSQDSQ EFWTSLYQSL GDSDRKDDLC PKIRSPIMAM TISMSIDVPA EPWKVLEDGH 60 KEAGPENDAA EVGAKNINEV GEKYTEKAME KGKEKEEAAK EETKSLGKRP PRGNYSASRN 120 SNEKRRRTGL RTKIETLKEL THCNGK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.26959s0069.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A178WIK0	4e-37	A0A178WIK0_ARATH; Uncharacterized protein
STRING	Bostr.26959s0069.1.p	1e-105	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15740	7	7

Link Out ? help Back to Top
Phytozome	Bostr.26959s0069.1.p