PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.26959s0086.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

BBR-BPC

Protein Properties

Length: 283aa MW: 31939.6 Da PI: 10.0954

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.26959s0086.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	317.1	5.6e-97	2	282	1	301
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaav........aerd........maflqrdkalae 69 md+dg +rn+gyyep+ +++ nlg+ql+ si +r++++ +++nl++++++ +rd m++ ++l++ Bostr.26959s0086.1.p 2 MDEDGLSNRNWGYYEPS-QFRPNLGFQLIPSIIDRNERPfvspQNQNLNFITPNVYRggsssvmsFPRDytvsdapfMSY----SWLNQ 85 9*************9.****************999999999998765544333333344455554444444....55555 PP GAGA_bind 70 rnkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrak. 157 +rd+k+++ l++ + ++ + +++t+ + + +l +++++ +++e+ ++++++ ++r++ Bostr.26959s0086.1.p 86 ------HRDSKFFSSLPNPSN--HH---HTLLVPETSRMT------------------QPMQLLQPEVVGEVDESLKRRHCSVGERGAp 145 ......777777777774443..11...123444444433..................3344677888999999999999998887652 PP GAGA_bind 158 kpkekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLP 245 pk+kk+kk k+ +++++++ ers +ksi++v+ngvs+D+++lPvPvCsCtG+++ CY+WG+GGWqSaCCtt++S+yPLP Bostr.26959s0086.1.p 146 APKAKKEKKLKD--------NNMPRVQrERSPLLRKSIEMVINGVSMDIGGLPVPVCSCTGMPQPCYRWGCGGWQSACCTTNVSMYPLP 226 566666666666........445555558899****************************************************** PP GAGA_bind 246 vstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +stkrrgaRiagrKmSqgaf+k+LekL+aeG+d+s p+DLk+hWAkHGtnkfvtir Bostr.26959s0086.1.p 227 MSTKRRGARIAGRKMSQGAFRKVLEKLSAEGFDFSIPIDLKSHWAKHGTNKFVTIR 282 *****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	9.2E-152	2	282	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	4.8E-85	2	282	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MMDEDGLSNR NWGYYEPSQF RPNLGFQLIP SIIDRNERPF VSPQNQNLNF ITPNVYRGGS 60 SSVMSFPRDY TVSDAPFMSY SWLNQHRDSK FFSSLPNPSN HHHTLLVPET SRMTQPMQLL 120 QPEVVGEVDE SLKRRHCSVG ERGAPAPKAK KEKKLKDNNM PRVQRERSPL LRKSIEMVIN 180 GVSMDIGGLP VPVCSCTGMP QPCYRWGCGG WQSACCTTNV SMYPLPMSTK RRGARIAGRK 240 MSQGAFRKVL EKLSAEGFDF SIPIDLKSHW AKHGTNKFVT IR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.26959s0086.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC012563	0.0	AC012563.7 Arabidopsis thaliana chromosome 1 BAC T23K23 genomic sequence, complete sequence.
GenBank	BT022117	0.0	BT022117.1 Arabidopsis thaliana At1g68120 mRNA, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006301584.1	0.0	protein BASIC PENTACYSTEINE3
Refseq	XP_023643123.1	0.0	protein BASIC PENTACYSTEINE3
Swissprot	Q9C9X6	1e-170	BPC3_ARATH; Protein BASIC PENTACYSTEINE3
TrEMBL	R0GFA2	0.0	R0GFA2_9BRAS; Uncharacterized protein
STRING	Bostr.26959s0086.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15347	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68120.1	1e-170	basic pentacysteine 3

Link Out ? help Back to Top
Phytozome	Bostr.26959s0086.1.p