PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26959s0139.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ARR-B
Protein Properties Length: 528aa    MW: 59263.3 Da    PI: 5.0569
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26959s0139.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.64.4e-26193247155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           k+r++W+ eLH++Fv+av+q+G  +kA Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Bostr.26959s0139.1.p 193 KTRVVWSFELHQKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRL 247
                           68****************************************************8 PP
2Response_reg80.26.9e-27131191107
                           EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS
          Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 
                           vl+vdD+p+ +++l+++l+k  y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + 
  Bostr.26959s0139.1.p  13 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLAREALRLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEL-DLPVIMMSVDGETSRVM 99 
                           89*********************.***************999999**********************5543.7**************** PP

                           HHHHTTESEEEESS--HHHH CS
          Response_reg  88 ealkaGakdflsKpfdpeel 107
                           + ++ Ga d+l Kp+ ++el
  Bostr.26959s0139.1.p 100 KGVQHGACDYLLKPIRMKEL 119
                           ***************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.9E-1511521IPR017053Response regulator B-type, plant
SuperFamilySSF521721.85E-3510132IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.9E-4310134No hitNo description
SMARTSM004485.6E-3211123IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.75512127IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.9E-2413120IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.00E-3114127No hitNo description
Gene3DG3DSA:1.10.10.601.2E-27190252IPR009057Homeodomain-like
SuperFamilySSF466891.97E-16191251IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-22193247IPR006447Myb domain, plants
PfamPF002492.1E-7195246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MEKGGFSPVG LRVLVVDDDP TWLKILEKML KKCSYEVTTC GLAREALRLL RERKDGYDIV  60
ISDVNMPDMD GFKLLEHVGL ELDLPVIMMS VDGETSRVMK GVQHGACDYL LKPIRMKELK  120
IIWQHVLRKK LQEVRDIEGC GYEGGADWIT RYDEAHFLGG GEDVSFGKRR KDFDFEKKLL  180
QDESDPSSSS SKKTRVVWSF ELHQKFVNAV NQIGCDHKAG PKKILDLMNV PWLTRENVAS  240
HLQKYRLYLS RLEKEKELKC YSGGVKNMDS SLKDAEVNSG HQSPGKSSYV FSGGNCLLQK  300
ATEIDPKPLA SASLSDPNTD VIMPPKTKKT RIGFDPPISS SAFDSLLPWN DVPEILESKP  360
VLYENSFLQQ QPLPSQSYVA NSATSLMEEE MKPPYKTPAG GSSVNAEFLM PQEKIPTVTI  420
QDLDPSAISC MKLQEFSSNV NNNTEAVLRS LNWELPESHH SASLDTDLDL SWLQGERFLA  480
NTGLQFQDYS SSPSLLSELA PHYWYGNERL PDPDEYSFMA DQGLFIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17189252163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26959s0139.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0415320.0AB041532.1 Arabidopsis thaliana ARR11 mRNA for response regulator 11, complete cds.
GenBankAK2282160.0AK228216.1 Arabidopsis thaliana mRNA for response regulator 11, complete cds, clone: RAFL14-66-N10.
GenBankBT0087680.0BT008768.1 Arabidopsis thaliana At1g67710 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415351.10.0PREDICTED: two-component response regulator ARR11-like
SwissprotQ9FXD60.0ARR11_ARATH; Two-component response regulator ARR11
TrEMBLR0GH620.0R0GH62_9BRAS; Two-component response regulator
STRINGBostr.26959s0139.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80662740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.10.0response regulator 11
Publications ? help Back to Top
  1. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  2. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]