PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26959s0184.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family TCP
Protein Properties Length: 353aa    MW: 40063.6 Da    PI: 4.8969
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26959s0184.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP129.63.2e-40882332129
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssasec....eaessss 80 
                           a+kkdrhski+T++g RdRRvRls+ +a++fFdLqd+LGfdk+skt++WLl+++ +aike ++       +   + ++     ++++++
  Bostr.26959s0184.1.p  88 AVKKDRHSKIYTAQGFRDRRVRLSVGVARQFFDLQDMLGFDKASKTLDWLLKKSRKAIKEVVQEknlnndN---E-DSgdngGDVEEEV 172
                           89**************************************************************5553321...1.2233332333333 PP

                   TCP  81 sasnsssg.............kaaksaakskksqksaasalnlak.esrakarararertrek 129
                           +++    +             ++   + k+ +++ ++++ +n++   sra+ r +a+ertre 
  Bostr.26959s0184.1.p 173 EEEDG--NksfvygsspefcgEKVVCKVKKAEKRMKKNELSNISSkGSRANTRGKAKERTREM 233
                           33322..1347888999999988888887777777777788877779*************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.0E-3989232IPR005333Transcription factor, TCP
PROSITE profilePS5136935.00790148IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.923216233IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MMMSSSNNDY NDGNNNGVYP LSLYLSSLSG HQDIIRNPYN QQLTASPGQM VSAVPESLID  60
YMAFNSNNAV NQQGFELPAE VSREIKKAVK KDRHSKIYTA QGFRDRRVRL SVGVARQFFD  120
LQDMLGFDKA SKTLDWLLKK SRKAIKEVVQ EKNLNNDNED SGDNGGDVEE EVEEEDGNKS  180
FVYGSSPEFC GEKVVCKVKK AEKRMKKNEL SNISSKGSRA NTRGKAKERT REMAYDLPET  240
ISDITQSETM DSFKRSIFFN EGEYLTHFFY KETIEEFDNQ EPILTKMKIN MPTNIYQSYN  300
QHTGAFMLID QGSSSNYNTI DLPLLDYNYE QNPFVDQTFC AVTDTNFPGG FP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-1595148154Putative transcription factor PCF6
5zkt_B6e-1595148154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26959s0184.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019083210.10.0PREDICTED: transcription factor TCP1-like
SwissprotQ9FYG71e-164TCP1_ARATH; Transcription factor TCP1
TrEMBLR0GHY50.0R0GHY5_9BRAS; Uncharacterized protein
STRINGBostr.26959s0184.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-149TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]