PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26959s0243.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 321aa    MW: 36088.6 Da    PI: 7.4113
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26959s0243.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.31.7e-15246270226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           ktelC+ +++tG C+yGd+C+FaHg
  Bostr.26959s0243.1.p 246 KTELCNKWQETGACPYGDNCQFAHG 270
                           9***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.7E-19239277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-11242276IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-8244271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.464244272IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-12246270IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-12278311IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-9278314IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-5282309IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.972282310IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEKLAASTVT DLACVTALNL NSPPPPLSPI SEKSFNNKHQ EEFAASFASL YNSIFSPESQ  60
FPISLSLSPS PPSSSSPPVR DDTTTEHRLR QARLILEYDE LNEHYELCLN RLQSLMTELD  120
SLRHENDALR YENSDLLNLI HISTSSSSSS VSPSPIHNRQ FRHQISDFGA IHKHSRSAKR  180
NSLPKSISVR SPGYLKINQG RSHGFGASDH QTSQLSSDSV PSQKVCVTTK EREALELEVY  240
RQGMMKTELC NKWQETGACP YGDNCQFAHG IDELRPVIRH PRYKTEVCRM IVTGATCPYG  300
HRCHFRHSLT DQEMMMMLTR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-21245308467Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26959s0243.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0132881e-113AC013288.7 Arabidopsis thaliana chromosome 1 BAC F4N21 genomic sequence, complete sequence.
GenBankCP0026841e-113CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470553.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ9C9N31e-156C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLR0GI871e-174R0GI87_9BRAS; Uncharacterized protein
STRINGBostr.26959s0243.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106232533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-149C3H family protein