PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26959s0262.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 246aa    MW: 27919.2 Da    PI: 4.7751
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26959s0262.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.21.7e-23102163159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                           l+Dg++WrKYGqK++k+s++ r YYrCt+a   +C+++k+v++ +++p v  +tY geH ++
  Bostr.26959s0262.1.p 102 LNDGFAWRKYGQKTIKNSPHQRCYYRCTYAkdqNCNATKRVQKIKDNPPVYRTTYVGEHVCK 163
                           58***************************99999*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-2496164IPR003657WRKY domain
PROSITE profilePS5081120.72597160IPR003657WRKY domain
SuperFamilySSF1182901.96E-2398163IPR003657WRKY domain
SMARTSM007744.5E-35102164IPR003657WRKY domain
PfamPF031069.1E-24103163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MFSNIDHKAV EALLRGQVCA NSLKTFLENC EISSVSTKPL INTILDSISL ALSSIDSPNP  60
PPHHESSSQN MASLVPQRSS KKKLCGVESL EYYRDDSTTP CLNDGFAWRK YGQKTIKNSP  120
HQRCYYRCTY AKDQNCNATK RVQKIKDNPP VYRTTYVGEH VCKDVAVHDD TYGSEMIQFD  180
KVVSESVMPQ LTTIDHQEIT MEEEDTDHIM NQEFEINDYL VDDDQSWANQ FPPFPSGDPM  240
FFDNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-20102163869OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.26959s0262.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001117559.11e-134WRKY DNA-binding protein 67
RefseqXP_020865923.11e-134probable WRKY transcription factor 67
SwissprotQ93WV71e-133WRK67_ARATH; Probable WRKY transcription factor 67
TrEMBLA0A178W9L21e-137A0A178W9L2_ARATH; WRKY67
STRINGBostr.26959s0262.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66560.11e-119WRKY DNA-binding protein 64