PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.27895s0003.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Protein Properties

Length: 219aa MW: 25220.9 Da PI: 9.9327

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.27895s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47	4.6e-15	22	97	11	96
HHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 11 lksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++++ l +p f+ +h g + e+kt l++ s +W+vk+ ++++ l++GW +F+ a++L++gD+vvFk +e+elv++v Bostr.27895s0003.1.p 22 FTNH-LDIPVAFFLKHlvGRN--EGKTAELRSnASETTWKVKI--DGQR----LSNGWDDFAVAHDLRVGDIVVFK----QERELVFHV 97 5555.99*******87655..6678888886788***..9888....*********************....445556655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	6.87E-18	9	109	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.462	11	103	IPR003340	B3 DNA binding domain
CDD	cd10017	1.56E-12	12	98	No hit	No description
SMART	SM01019	1.0E-17	14	103	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.3E-18	14	113	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	4.8E-10	23	97	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MANQPLYSPI NPHFFQPPLP GFTNHLDIPV AFFLKHLVGR NEGKTAELRS NASETTWKVK 60 IDGQRLSNGW DDFAVAHDLR VGDIVVFKQE RELVFHVSAL GPSCCEIQYG EDNPDEDKRA 120 FLVKKKIENR EKRFDKHYKK TLRFSTDFPT VKVPPDISDG FPIKKLSHFG CREAVGIFGQ 180 LIIKRRFSNR YKLSETQTFL RCLTDGCSTT YVRRRRFP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.27895s0003.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002880610.1	2e-65	B3 domain-containing protein REM10 isoform X3
Swissprot	P0DH85	9e-66	REM10_ARATH; B3 domain-containing protein REM10
TrEMBL	D7LIC1	4e-64	D7LIC1_ARALL; Transcriptional factor B3 family protein
STRING	Bostr.27895s0003.1.p	1e-162	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM204	22	261

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24700.1	4e-68	B3 family protein

Link Out ? help Back to Top
Phytozome	Bostr.27895s0003.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]