PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.27895s0005.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Protein Properties

Length: 557aa MW: 63443.6 Da PI: 8.4209

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.27895s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.1	1.8e-14	21	97	10	96
HHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 10 vlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++++ l +p f+ +h g + ++kt l++ s +W+vk+ ++++ l++GW +F+ a++L++gD+vvFk +e+elv++v Bostr.27895s0005.1.p 21 GFTNH-LDIPVAFFLKHlvGRN--QGKTAELRSdASETTWKVKM--DGRR----LSNGWDDFAIAHDLRVGDIVVFK----QERELVFHV 97 56666.9********86655..6778888876899***..9998....*********************....344455554 PP
2	B3	63.6	3.1e-20	152	243	3	95
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 +++++++lk++ +++pk+fa ++g+ ++++++l++e+g+sW++ l++ ++sgr+ +++GW++F+ ang k gD + Fkl+++ + Bostr.27895s0005.1.p 152 VATVTASNLKRDTVYIPKEFALSNGLM--NKFQIVLMNEEGESWTLDLRHnaYRHSGRFNMRRGWRSFCVANGKKPGDLFAFKLVQNeE 238 567899****************988..5678***********9988899999************************99733 PP EE..EEE CS B3 89 efelvvk 95 + +v++ Bostr.27895s0005.1.p 239 T--PVLQ 243 3..4444 PP
3	B3	59.2	7.1e-19	280	370	3	96
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ++++ ++l+++rl+lpk+f+ ++g+ k++ ++ l+ e+ +sW++ ++++ +sgr++ +GW++F+ ang k gD+++Fkl++++e Bostr.27895s0005.1.p 280 VATVTDSNLRRDRLYLPKTFIMSNGLLKKS--QMLLMYEERESWTIDVKHEAYSGRFLTIRGWRRFCVANGKKPGDSFTFKLVQNEEI- 365 5678999***************998766..588888999999999999***999********************996544. PP .EEEE CS B3 92 lvvkv 96 +v+++ Bostr.27895s0005.1.p 366 PVLQL 370 66665 PP
4	B3	43.8	4.6e-14	472	555	12	99
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +rl lp +f++++g++k++ ++t+ d+ g +W+ l ++k++ ++ l++G k+F++ ng+k +++v++l++ +++ +++k+++k Bostr.27895s0005.1.p 472 PASRLNLPLEFMKAIGINKAG--KITMLDRYGARWSTSLLMDKRG-TMRLGRGSKGFCEVNGVKMDESFVLELIW-EDTIPLLKFCSK 555 55799***********887..7***********766664.679************************.777799999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.2E-19	8	105	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.67E-19	9	109	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.364	11	103	IPR003340	B3 DNA binding domain
CDD	cd10017	3.67E-15	12	98	No hit	No description
SMART	SM01019	2.7E-21	14	103	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.3E-9	24	97	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.1E-20	148	243	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	15.227	150	250	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.33E-19	150	243	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.05E-16	150	244	No hit	No description
SMART	SM01019	2.5E-28	151	250	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.7E-19	151	243	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.7E-20	271	368	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.75E-20	272	369	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	13.366	278	374	IPR003340	B3 DNA binding domain
CDD	cd10017	2.67E-17	278	372	No hit	No description
SMART	SM01019	6.9E-29	279	374	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-16	279	371	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.3E-15	458	555	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.59E-15	459	554	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.629	461	555	IPR003340	B3 DNA binding domain
SMART	SM01019	8.3E-21	465	556	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.3E-12	471	555	IPR003340	B3 DNA binding domain
CDD	cd10017	1.08E-9	474	554	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence Send to blast
MANQPLYSPI NPHFFQPLLP GFTNHLDIPV AFFLKHLVGR NQGKTAELRS DASETTWKVK 60 MDGRRLSNGW DDFAIAHDLR VGDIVVFKQE RELVFHVTAL GPSCCEIQYR GDNPDEEKRE 120 KLCDTEKVSR KKKSLKREAN SAPDHSLDSC FVATVTASNL KRDTVYIPKE FALSNGLMNK 180 FQIVLMNEEG ESWTLDLRHN AYRHSGRFNM RRGWRSFCVA NGKKPGDLFA FKLVQNEETP 240 VLQVQLFPMD SEDPEKLQNV PRKKSREIEA DSSPDPSCFV ATVTDSNLRR DRLYLPKTFI 300 MSNGLLKKSQ MLLMYEERES WTIDVKHEAY SGRFLTIRGW RRFCVANGKK PGDSFTFKLV 360 QNEEIPVLQL FPLNSEDRHN LEPSSDTKQE KCLEATKKEF LGIEATEKEF LGVEVCRNDS 420 TQVNCFKASV AEPTNDDIKQ GKCSQAIKQE CVFTEGNSLT SQNRFVTLKL TPASRLNLPL 480 EFMKAIGINK AGKITMLDRY GARWSTSLLM DKRGTMRLGR GSKGFCEVNG VKMDESFVLE 540 LIWEDTIPLL KFCSKV*

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence Send to blast

MANQPLYSPI NPHFFQPLLP GFTNHLDIPV AFFLKHLVGR NQGKTAELRS DASETTWKVK  60
MDGRRLSNGW DDFAIAHDLR VGDIVVFKQE RELVFHVTAL GPSCCEIQYR GDNPDEEKRE  120
KLCDTEKVSR KKKSLKREAN SAPDHSLDSC FVATVTASNL KRDTVYIPKE FALSNGLMNK  180
FQIVLMNEEG ESWTLDLRHN AYRHSGRFNM RRGWRSFCVA NGKKPGDLFA FKLVQNEETP  240
VLQVQLFPMD SEDPEKLQNV PRKKSREIEA DSSPDPSCFV ATVTDSNLRR DRLYLPKTFI  300
MSNGLLKKSQ MLLMYEERES WTIDVKHEAY SGRFLTIRGW RRFCVANGKK PGDSFTFKLV  360
QNEEIPVLQL FPLNSEDRHN LEPSSDTKQE KCLEATKKEF LGIEATEKEF LGVEVCRNDS  420
TQVNCFKASV AEPTNDDIKQ GKCSQAIKQE CVFTEGNSLT SQNRFVTLKL TPASRLNLPL  480
EFMKAIGINK AGKITMLDRY GARWSTSLLM DKRGTMRLGR GSKGFCEVNG VKMDESFVLE  540
LIWEDTIPLL KFCSKV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.27895s0005.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007266	1e-83	AC007266.5 Arabidopsis thaliana chromosome 2 clone F27A10 map mi238, complete sequence.
GenBank	CP002685	1e-83	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002880610.1	0.0	B3 domain-containing protein REM10 isoform X3
Swissprot	P0DH85	0.0	REM10_ARATH; B3 domain-containing protein REM10
TrEMBL	D7LIC1	0.0	D7LIC1_ARALL; Transcriptional factor B3 family protein
STRING	Bostr.27895s0005.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14490	15	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24700.1	0.0	B3 family protein

Link Out ? help Back to Top
Phytozome	Bostr.27895s0005.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]