PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.27895s0010.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 828aa    MW: 93816.6 Da    PI: 8.1365
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.27895s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.11.3e-2180173298
                           EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                    B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                           ++ ++ +  ++++rl+lp +f++e+g++k++  ++ l  ++g +W  +l  + ++gr++l++GWk+FvkangLk+g++v+++l + +++
  Bostr.27895s0010.1.p  80 VTFTLAPVDGRHCRLRLPMQFTRENGINKPG--KIYLLGKDGSKWLANLLLESRRGRMTLGDGWKSFVKANGLKTGESVTLRLYW-EDT 165
                           55666777899***************99776..8***************99*******************************999.888 PP

                           ..EEEEE- CS
                    B3  91 elvvkvfr 98 
                           ++v++++ 
  Bostr.27895s0010.1.p 166 TPVLSLCP 173
                           89999986 PP
2B361.91e-19256347398
                           EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                    B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                           + ++++d+lk+grl+lp +f+ e++++k++  ++tl  ++g +W   l    k+gr+ l+kGWk+F+kan+Lk+ D+++++ ++ ++++
  Bostr.27895s0010.1.p 256 TLTITPDSLKHGRLRLPLQFMMENSMNKPG--EITLLGKDGAKWLASLL-LEKRGRMSLGKGWKDFAKANDLKTDDSITLESIW-ENGT 340
                           56789*******************999766..8***************5.66667889***********************999.7777 PP

                           .EEEEE- CS
                    B3  92 lvvkvfr 98 
                           + + ++r
  Bostr.27895s0010.1.p 341 PILNLLR 347
                           8777665 PP
3B3642.3e-20591675188
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                           f++ ++++d+l++grl+lp +f++e++++k++  ++tl  ++g +W v l    ++gr+ l+kGWk F+k+ngLk+gD+++++ ++++
  Bostr.27895s0010.1.p 591 FLTLTITPDSLRHGRLRLPMEFMTENSMNKPG--EITLLGKDGAKWLVSLL-LERRGRMSLGKGWKIFAKENGLKTGDSITLESIWQN 675
                           778899********************999766..8***************5.55556789***********************88753 PP
4B344.82.2e-14737825497
                           E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                    B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                           +lt++dv   + l lp kf++ +g++k++  ++tl  + g +W  +l    ++g++vl++GWk+F +ang+  g++++++++ +++++ 
  Bostr.27895s0010.1.p 737 TLTTEDVRDGN-LHLPSKFMRINGINKPG--KITLLGRGGMKWFAYL--LSRDGTVVLGNGWKGFWEANGVMLGESFILEFIPKEDTNH 820
                           56667776665.********999999766..8***************..99999**************************997788877 PP

                           EEEEE CS
                    B3  93 vvkvf 97 
                           v+k++
  Bostr.27895s0010.1.p 821 VFKFY 825
                           77766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0029003137IPR003006Immunoglobulin/major histocompatibility complex, conserved site
SuperFamilySSF1019361.61E-2275177IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-2375175IPR015300DNA-binding pseudobarrel domain
CDDcd100172.53E-1977173No hitNo description
PROSITE profilePS5086315.14379175IPR003340B3 DNA binding domain
SMARTSM010194.0E-3079175IPR003340B3 DNA binding domain
PfamPF023625.6E-2179173IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.5E-20249343IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-21250343IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-17253347No hitNo description
PROSITE profilePS5086314.522254349IPR003340B3 DNA binding domain
SMARTSM010192.0E-29254349IPR003340B3 DNA binding domain
PfamPF023625.5E-19256347IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.0E-4416453IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-20586684IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-21587682IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.65591686IPR003340B3 DNA binding domain
CDDcd100171.23E-17591684No hitNo description
SMARTSM010197.0E-27591686IPR003340B3 DNA binding domain
PfamPF023621.0E-19591676IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-17725824IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-20727824IPR015300DNA-binding pseudobarrel domain
CDDcd100174.47E-12732825No hitNo description
PROSITE profilePS5086313.352733827IPR003340B3 DNA binding domain
SMARTSM010191.5E-17733826IPR003340B3 DNA binding domain
PfamPF023622.9E-13733826IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 828 aa     Download sequence    Send to blast
MMIQFSDHHD NNIEFQRKKK LKKNPETEAD YSCFVNHVTA SSLQTDALYL PQDFTSSNGL  60
NRNCSKSLRH IISPSEKHFV TFTLAPVDGR HCRLRLPMQF TRENGINKPG KIYLLGKDGS  120
KWLANLLLES RRGRMTLGDG WKSFVKANGL KTGESVTLRL YWEDTTPVLS LCPEEYNTDP  180
RVEEERLEAS EKESLPIETS SKENMIKDDN NKDGNNKHET NKDENTKDES SSWKKRENNH  240
LISIESTSLS QNHIVTLTIT PDSLKHGRLR LPLQFMMENS MNKPGEITLL GKDGAKWLAS  300
LLLEKRGRMS LGKGWKDFAK ANDLKTDDSI TLESIWENGT PILNLLRIES GSGRGKSDFS  360
KESLSIEPSS GNKTKKADNN REESKKYPPR SRESSSAIQN QFMALTLRCN IFSQVAHDLQ  420
TGEVVIFRHE GDNMLQVSDL GPNCCGIRDV QSPSSSNDHD SIGSISMKMH PYLRKEAGFT  480
SYDGDDHDNF EHPSKKKVKK NNPETEEDYS SDHSRFVAHV TTSSLHTNAL SLVAKESLPI  540
EPSIEKKISE DDNSKEENSK DENNIEVSSS CEREKNHVRC IDSISPSQNR FLTLTITPDS  600
LRHGRLRLPM EFMTENSMNK PGEITLLGKD GAKWLVSLLL ERRGRMSLGK GWKIFAKENG  660
LKTGDSITLE SIWQNASHVL SLLRIESSSV RGQSEFPKES HFIDREERYS RELKKKPYCP  720
RKRDSSSDNQ NRFLTLTLTT EDVRDGNLHL PSKFMRINGI NKPGKITLLG RGGMKWFAYL  780
LSRDGTVVLG NGWKGFWEAN GVMLGESFIL EFIPKEDTNH VFKFYSN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11522QRKKKLKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.27895s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069541e-143AC006954.8 Arabidopsis thaliana chromosome 2 clone F25P17 map mi238, complete sequence.
GenBankCP0026851e-143CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639408.10.0B3 domain-containing protein REM-like 1 isoform X1
SwissprotQ8S8E80.0REML1_ARATH; B3 domain-containing protein REM-like 1
TrEMBLA0A1P8B0R00.0A0A1P8B0R0_ARATH; Transcriptional factor B3 family protein
STRINGBostr.27895s0010.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150791619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24690.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]