PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.27895s0113.2.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 239aa    MW: 27036.4 Da    PI: 6.5316
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.27895s0113.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.86.1e-111994178
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT- CS
                    B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegD 78
                          ffk+l + + +++ +  +p +f++++++k e   +++l+ ++g sW +++  +++    y+ ++GW +F ++n L ++ 
  Bostr.27895s0113.2.p 19 FFKILRKDNLSSEIMRAIPLNFIKSISNK-EFLAKMVLKVSWGSSWPITI--SRNITFyYMEKRGWDKFLSDNALGQNK 94
                          89999666666666669******999755.6888****************..888888566779***********9875 PP
2B345.81.1e-141272041698
                           EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                    B3  16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                           l +pk f e h+ k  e+++ +++d++g +sWev ++++++++r  + +GW + +k+ gL +gD+++Fkl++   +e+++kv +
  Bostr.27895s0113.2.p 127 LGIPKIFEEMHMPK--ETTMFKIRDPKGnKSWEVMYKVTGTQSR--FVAGWIRLAKELGLVVGDVCTFKLIK--PTEMLLKVSK 204
                           78*****9999744..56799****9999*******66666666..679********************987..5556777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-101394IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-91593IPR015300DNA-binding pseudobarrel domain
CDDcd100173.01E-101793No hitNo description
PfamPF023621.3E-91994IPR003340B3 DNA binding domain
PROSITE profilePS508637.8951990IPR003340B3 DNA binding domain
SMARTSM010194.2E-519104IPR003340B3 DNA binding domain
PROSITE profilePS5086311.829112206IPR003340B3 DNA binding domain
SuperFamilySSF1019366.08E-18112204IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-16113204IPR015300DNA-binding pseudobarrel domain
CDDcd100173.94E-14113203No hitNo description
SMARTSM010191.3E-14115206IPR003340B3 DNA binding domain
PfamPF023621.6E-11127201IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MVKNRGFGQL MDEGDSPGFF KILRKDNLSS EIMRAIPLNF IKSISNKEFL AKMVLKVSWG  60
SSWPITISRN ITFYYMEKRG WDKFLSDNAL GQNKTKVEAV CNVSEDDTSC LVPQFTLTIK  120
KAYLIFLGIP KIFEEMHMPK ETTMFKIRDP KGNKSWEVMY KVTGTQSRFV AGWIRLAKEL  180
GLVVGDVCTF KLIKPTEMLL KVSKKGLHDY AAEVISDDDD VCEVSSDDDD DVCEVISV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.27895s0113.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0044822e-80AC004482.3 Arabidopsis thaliana chromosome 2 clone F27L4 map CIC06C07, complete sequence.
GenBankCP0026852e-80CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020877797.11e-53B3 domain-containing protein At5g18090
SwissprotQ9FK618e-50Y5809_ARATH; B3 domain-containing protein At5g18090
TrEMBLD7LXR42e-52D7LXR4_ARALL; Transcriptional factor B3 family protein
STRINGBostr.27895s0113.1.p1e-154(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.14e-52B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]