PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.27895s0119.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family TALE
Protein Properties Length: 636aa    MW: 70462.4 Da    PI: 6.93
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.27895s0119.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.81e-094534901954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           Fe   n+yps +++  LA+++gL+ +qV++WF N R +
  Bostr.27895s0119.1.p 453 FEHflNPYPSDADKHLLARQTGLSRNQVSNWFINARVR 490
                           665569******************************88 PP
2BELL123.77.5e-40311382172
                  BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           +r e+q++k+kLls+leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+
  Bostr.27895s0119.1.p 311 DRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAVQL 382
                           589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-84239380IPR006563POX domain
PfamPF075266.1E-52245379IPR006563POX domain
PROSITE profilePS5007112.86431494IPR001356Homeobox domain
SMARTSM003891.1E-9434498IPR001356Homeobox domain
CDDcd000866.01E-13434495No hitNo description
SuperFamilySSF466891.13E-17435501IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-28437500IPR009057Homeodomain-like
PfamPF059202.9E-18451490IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MDLAATTLHH HHHHNSDSSM SQDYHHHQGI FSFSNGFHRS SATTHQEEVD ESAVSGAQIP  60
VYETAGMLSE MFAFPGGGGS GGEILDQSTK QLLEQQNRHN NNNNNNSTLH MLLPNHHQGF  120
AFTDENTMQQ QQQQHFTWPS SSDHHHNRDM IGTVHVEGGK GLSLSLSSSL AAAKAEEYRS  180
IYCAAVDGTS SSSNASAHHH QFNQFKNLLL DNNSSHHHHQ VVGHFGSSSS SPMAASSSIG  240
GFYTLRNSKY TKPAQELLEE FCSVGRGHFK KNKLSRNNSN PNTTGGGGGG GGGSSSSVGT  300
ANDNPPLSPA DRIEHQRRKV KLLSMLEEVD RRYNHYCEQM QMVVNSFDQV MGYGAAVPYT  360
TLAQKAMSRH FRCLKDAVAV QLKRSCELLG DKEAAGAASS GLTKGETPRL RLLEQSLRQQ  420
RAFHHLGIME QEAWRPQRGL PERSVNILRA WLFEHFLNPY PSDADKHLLA RQTGLSRNQV  480
SNWFINARVR LWKPMVEEMY QQEAKEREEE AEENEIQQQR RQQQTNNNDT KPNNNENNFT  540
VITAQTPKTM TSTHHDIDSS FLPSVAATSH GGSDAFTVTT CQQDVSDFHV DDGGVNVIRF  600
GTKQAGDVSL TLGLRHSGNI PDKNTSFSVR DFGDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A1e-15440498563Homeobox protein Meis2
4xrm_B1e-15440498563Homeobox protein Meis2
4xrs_A9e-16440497158Homeobox protein Meis1
4xrs_B9e-16440497158Homeobox protein Meis1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283293TGGGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.27895s0119.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3530920.0AF353092.1 Arabidopsis thaliana BEL1-like homeobox 4 (BLH4) mRNA, complete cds.
GenBankAY0581790.0AY058179.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds.
GenBankAY1420190.0AY142019.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010429329.10.0PREDICTED: BEL1-like homeodomain protein 4 isoform X3
RefseqXP_019085111.10.0PREDICTED: BEL1-like homeodomain protein 4 isoform X1
SwissprotQ94KL50.0BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBLD7LG220.0D7LG22_ARALL; Uncharacterized protein
STRINGBostr.27895s0119.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.30.0BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]