PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.27991s0013.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

G2-like

Protein Properties

Length: 169aa MW: 19249 Da PI: 10.0342

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.27991s0013.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88.2	7.8e-28	81	132	3	55
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 rl+Wtp+LH+rFv+av +L +++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Bostr.27991s0013.1.p 81 RLVWTPQLHKRFVDAVGHL-VIKNAVPKTIMQLMSVQGLTRENVASHLQKYRL 132 9****************.9*****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.2E-17	76	134	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.1E-27	78	134	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.9E-22	81	133	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MREDNPNWFL RWEDELPSPE ELIPISQTLI TPHLALAFQI GSPNHHLGSK KIASDDSNSS 60 TNDYEFGLIG GEPARTLKRL RLVWTPQLHK RFVDAVGHLV IKNAVPKTIM QLMSVQGLTR 120 ENVASHLQKY RLAREYEAPL RVHSKKKARF FPVEHQNPTA NALNDKER*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	4e-27	79	132	1	54	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.27991s0013.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC002409	1e-44	AC002409.3 Arabidopsis thaliana chromosome 2 clone T20B5 map CIC11C08, complete sequence.
GenBank	AC004261	1e-44	AC004261.3 Arabidopsis thaliana chromosome 2 clone T3K9 map CIC11C08, complete sequence.
GenBank	AY072381	1e-44	AY072381.1 Arabidopsis thaliana unknown protein (At2g40970) mRNA, complete cds.
GenBank	BT000098	1e-44	BT000098.1 Arabidopsis thaliana unknown protein (At2g40970) mRNA, complete cds.
GenBank	CP002685	1e-44	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_181630.1	2e-63	Homeodomain-like superfamily protein
Swissprot	O22210	2e-64	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	A0A178VYV1	4e-62	A0A178VYV1_ARATH; MYBC1
STRING	Bostr.27991s0013.1.p	1e-122	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1549	27	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40970.1	7e-67	G2-like family protein

Link Out ? help Back to Top
Phytozome	Bostr.27991s0013.1.p

Publications ? help Back to Top
Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741]