PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.27991s0056.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family M-type_MADS
Protein Properties Length: 374aa    MW: 43205.9 Da    PI: 6.2972
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.27991s0056.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.39.7e-141151343
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                          +en+  r +++ +R +g+lKK +EL +LC++++++iifs++
  Bostr.27991s0056.1.p 11 VENDKARAISLKRRIEGLLKKVKELTILCNIRACIIIFSPN 51
                          69*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.764151IPR002100Transcription factor, MADS-box
SMARTSM004325.2E-19160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-19294IPR002100Transcription factor, MADS-box
CDDcd002663.42E-27284No hitNo description
PRINTSPR004046.0E-5323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-121151IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MTRKKIQLAW VENDKARAIS LKRRIEGLLK KVKELTILCN IRACIIIFSP NEVEPVVWPS  60
VETARGLLDD FFALPKFEQK KKETGVESFL KEKTKTVHEQ LMKSHKKNKE HLTDELMMQL  120
QHGRGIDDLN LSEIYGLLSF SRDKIILCSK KLDFMQFSPL RDPPVLPFEV QVEQLTITTN  180
YVFVGGGQED DKTGTTDEAT RIINIDTLRE NKSHYLIDQW VFSPKPLKPV LYQQIRNENP  240
NSNSYCPYQG SSSNGNPSLE MESVYPQVIS FHGLVGSTSQ PLQHHNMNNN PIMAMNQPKQ  300
YPFDFISREL EIQEEENNIN NSQFYRSNNT ITTNDDLRQE PPPNETIARE DNHVNLTSFD  360
INRVWPDFNN HHF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.27991s0056.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513278.10.0PREDICTED: agamous-like MADS-box protein AGL36
TrEMBLA0A178VQF21e-162A0A178VQF2_ARATH; AGL48
TrEMBLQ9XEF11e-162Q9XEF1_ARATH; AGAMOUS-like 48
STRINGBostr.27991s0056.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47241446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.11e-162AGAMOUS-like 48