PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.27991s0074.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

LBD

Protein Properties

Length: 237aa MW: 25924.3 Da PI: 5.0857

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.27991s0074.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.8	8e-43	54	153	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da++s+vyeA ar+rdPvyG++g i +lq+q+++ Bostr.27991s0074.1.p 54 PCAACKILRRRCAEKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARIRDPVYGCAGAIYHLQRQVSE 142 7************************************************************************************** PP DUF260 90 lkaelallkee 100 l+a+la+++ e Bostr.27991s0074.1.p 143 LQAQLAKTQVE 153 ****99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.332	53	154	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-42	54	151	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MLKMEINGGV ATPTASAVAV TAVKETTTPV SSPSPTSSPP SPKQPPQTPV VLSPCAACKI 60 LRRRCAEKCV LAPYFPPTDP AKFTIAHRVF GASNIIKFLQ ELPESQRTDA VNSMVYEAGA 120 RIRDPVYGCA GAIYHLQRQV SELQAQLAKT QVELVGMQLQ RSSLLELIYK MEQTKLSAQE 180 QGQHKMSFES SFESGDEFIS SPDEESNDLG FLEDSNNNNN NINNNSSMSW WDPLWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-42	46	155	3	112	LOB family transfactor Ramosa2.1
5ly0_B	3e-42	46	155	3	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.27991s0074.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473840	0.0	AB473840.1 Arabidopsis thaliana ASL7 mRNA for ASYMMETRIC LEAVES2-like 7 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_180417.2	1e-137	LOB domain-containing protein 11
Swissprot	Q9SK08	1e-138	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	R0FXT9	1e-135	R0FXT9_9BRAS; Uncharacterized protein
STRING	Bostr.27991s0074.1.p	1e-177	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	1e-109	LOB domain-containing protein 11

Link Out ? help Back to Top
Phytozome	Bostr.27991s0074.1.p