PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.27991s0108.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 284aa    MW: 30645.2 Da    PI: 8.2869
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.27991s0108.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00044113135123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y+C+ C+++Fs+   L  H  +H
  Bostr.27991s0108.1.p 113 YECKTCNRTFSSFQALGGHRASH 135
                           99**********99999998887 PP
2zf-C2H213.40.00024188210123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++Cg  F++   L  H+r+H
  Bostr.27991s0108.1.p 188 HECSICGSEFTSGQALGGHMRRH 210
                           78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.0E-12112137IPR007087Zinc finger, C2H2
SuperFamilySSF576677.04E-9112135No hitNo description
SMARTSM003550.063113135IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.99113140IPR007087Zinc finger, C2H2
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
SuperFamilySSF576677.04E-9183210No hitNo description
Gene3DG3DSA:3.30.160.609.2E-4186210IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139128.3E-12187212IPR007087Zinc finger, C2H2
SMARTSM003550.019188210IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076188215IPR007087Zinc finger, C2H2
PROSITE patternPS000280190210IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MMMGQDEVGS DQTQIIKGKR TKRQRSSSTF AVAATTVTST SSSAGGSGGR AVSDEYNSAV  60
SSPVTTDCTR EEEDMANCLI MLARGTVLPS PDLKNSRKTH EKISSENSSF YVYECKTCNR  120
TFSSFQALGG HRASHKKPRT STDEKTRSPL MQPKSSLSEE GQNSLFKVSG SALASQASNI  180
INKANKVHEC SICGSEFTSG QALGGHMRRH RAATTAVSTV AAAEVSRNST EEEIEINLGR  240
SMEKQRKYLP LDLNLPAPED DLRESKFQGI VFSATPALID CHY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.27991s0108.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0058510.0AC005851.3 Arabidopsis thaliana chromosome 2 clone F24D13 map B68, complete sequence.
GenBankAC0062020.0AC006202.4 Arabidopsis thaliana chromosome 2 clone T3B23 map mi54, complete sequence.
GenBankAK1754930.0AK175493.1 Arabidopsis thaliana mRNA for putative zinc-finger protein, complete cds, clone: RAFL21-92-D09.
GenBankAK2298120.0AK229812.1 Arabidopsis thaliana mRNA for putative zinc-finger protein, complete cds, clone: RAFL21-88-O10.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880944.20.0zinc finger protein ZAT5
SwissprotQ681X40.0ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A178VUQ31e-179A0A178VUQ3_ARATH; Uncharacterized protein
STRINGBostr.27991s0108.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-166C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]