PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.27991s0167.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GRAS
Protein Properties Length: 715aa    MW: 80193.7 Da    PI: 6.7039
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.27991s0167.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.51.9e-1123387111373
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           l++ L++cA+avs +d + a+ lL+r+++++s++gd ++Rla+yf++ L+arla+ ++++y al++++ts    s+ l+a++++  v+P
  Bostr.27991s0167.1.p 338 LRTMLVSCAQAVSINDRRTADDLLSRIRQHSSSYGDGTERLAHYFANSLEARLAGIGTQVYTALSSKKTS---ASDMLKAYQTYISVCP 423
                           5789**************************************************************9999...9*************** PP

                  GRAS  90 ilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
                           + k++ + aN+ I++ ++++  +++HiiDf+is+G+QWp+L++ La R++++ +lRiTg++ p+ g   +e + etg+rLak++++++v
  Bostr.27991s0167.1.p 424 FKKIAIIFANHSIMRLASTAnaKTLHIIDFGISYGFQWPSLIHRLAWRRASSCKLRITGIELPQRGfrPAEGVIETGHRLAKYCQKFNV 512
                           *************998877666999***************************************99*********************** PP

                  GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                           pfe+n+ +a+++e+++le+L++k gE +aVn+ ++  +llde+v+++s+rd+vLkl+++++P+v++ +    ++n++ F++rf e l +
  Bostr.27991s0167.1.p 513 PFEYNA-IAQKWETIKLEDLKLKDGEFVAVNSLFRFRNLLDETVAVNSPRDAVLKLIRKIKPDVFIPSILSGSYNAPFFVTRFREVLFH 600
                           ******.7********************************************************************************* PP

                  GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrv 351
                           ys+lfd+ +++l re+  r++ E+e+ grei+nvvaceg+er+er e++++W++r ++aGF+++pl+++ +++ kll++  +  +++ v
  Bostr.27991s0167.1.p 601 YSSLFDMCDTNLTREDPMRVMFEKEFYGREIMNVVACEGTERVERPESYKQWQARAMRAGFRQIPLEKELVQKLKLLVESGYkTKEFDV 689
                           ******************************************************************************99888999*** PP

                  GRAS 352 eeesgslvlgWkdrpLvsvSaW 373
                           +++ ++l++gWk+r ++  S+W
  Bostr.27991s0167.1.p 690 DQDCNWLLQGWKGRIVYGSSVW 711
                           ********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.366312691IPR005202Transcription factor GRAS
PfamPF035146.4E-110338711IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MGSYSAGFPG SLDWFDFPGL GNGFYLHDQP LLDIGSVPPP PEPYSQQNLA SADADFSDPV  60
LKYISQVLME EDMEDKPCMF HDALSLQAAE KSLYEALGEK YPDDDSQSLI TTTRPAQLVS  120
SPGGSSYASS TTTTSSDSQW SFDCLENNRP SSWLQTPIPN NFVFQSISTK SSRSPQSVVG  180
GGNAVFGSSF SNDFVSNMFN GSELASQFKK GIEEASKFLP KSSQLVIDVE NYIPALGSKE  240
KDTSVPYRLT GKKSHWREDE HLAEERSKKQ SAVYVDEAEL TEMFDKVLIF GEAKEQPVCI  300
LHENFPKEPA KASSVSKSHK GEKPAASGNS YTKDTPDLRT MLVSCAQAVS INDRRTADDL  360
LSRIRQHSSS YGDGTERLAH YFANSLEARL AGIGTQVYTA LSSKKTSASD MLKAYQTYIS  420
VCPFKKIAII FANHSIMRLA STANAKTLHI IDFGISYGFQ WPSLIHRLAW RRASSCKLRI  480
TGIELPQRGF RPAEGVIETG HRLAKYCQKF NVPFEYNAIA QKWETIKLED LKLKDGEFVA  540
VNSLFRFRNL LDETVAVNSP RDAVLKLIRK IKPDVFIPSI LSGSYNAPFF VTRFREVLFH  600
YSSLFDMCDT NLTREDPMRV MFEKEFYGRE IMNVVACEGT ERVERPESYK QWQARAMRAG  660
FRQIPLEKEL VQKLKLLVES GYKTKEFDVD QDCNWLLQGW KGRIVYGSSV WVPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-453427118374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.27991s0167.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0053150.0AC005315.3 Arabidopsis thaliana chromosome 2 clone T9I4 map mi54, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882830.10.0scarecrow-like protein 33 isoform X1
RefseqXP_020882831.10.0scarecrow-like protein 33 isoform X1
SwissprotP0C8830.0SCL33_ARATH; Scarecrow-like protein 33
TrEMBLD7LKB70.0D7LKB7_ARALL; Scarecrow transcription factor family protein
STRINGBostr.27991s0167.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein