PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.28243s0053.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 461aa    MW: 52378.4 Da    PI: 5.7284
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.28243s0053.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12294339454
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           +h e+Er RR+++N++f  Lr ++P+       K++K++ Le Av+YI++L
  Bostr.28243s0053.1.p 294 NHVEAERMRREKLNHRFYALRAVVPNV-----SKMDKMSLLEDAVRYINEL 339
                           799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.4E-5133226IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.552290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-17293360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.19E-13293340No hitNo description
Gene3DG3DSA:4.10.280.101.2E-15294360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-10294339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-14296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005509Molecular Functioncalcium ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MNTDGNLYMM ESLLTSDLWQ PLPPANPSLE TTLQKRLHAV LNGTHEPWTY AIFWKPSYYD  60
FSGESMLKWG DGVYSGRDKE EKTRRRKRKM MIPSSPEEKE RRNKVLRELN FMISGEAFPV  120
VEDDDVHDDD DDVEVTDMEW FFLVSMTWSF GNGSGLPGKA FTTYNPVWVT GSDQIYESGC  180
DRAKQGGGLG LQTIVCIPCD NGVLELGSME QIRQNSDIFN KTRFLFNFQG SKDFSGALTT  240
SIQFHSSTDN PNPDPSQVYQ PIQTNRIDAT VIPKKKPGKK RGRKPAHGRE EPLNHVEAER  300
MRREKLNHRF YALRAVVPNV SKMDKMSLLE DAVRYINELK SKAENAESEK NAIQIQLDEL  360
NEIMGRQNAI SSVCNDKENV SELKIEVKIM GNDVMIRVES GKRKHPGARL MNALMDLELE  420
VDHAAISVMN DLMIQQATVT MGLRIYEQEQ LRDTLISKIS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A9e-49302286194Transcription factor MYC3
4rqw_B9e-49302286194Transcription factor MYC3
4rs9_A9e-49302286194Transcription factor MYC3
4yz6_A9e-49302286194Transcription factor MYC3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00547DAPTransfer from AT5G46830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.28243s0053.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010441529.10.0PREDICTED: transcription factor bHLH28-like
SwissprotQ9LUK70.0BH028_ARATH; Transcription factor bHLH28
TrEMBLD7MQN90.0D7MQN9_ARALL; Predicted protein
STRINGBostr.28243s0053.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139531624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.10.0NACL-inducible gene 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chen X,Huang H,Qi T,Liu B,Song S
    New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
    Plant Signal Behav, 2016. 11(2): p. e1135280
    [PMID:26829586]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Song S, et al.
    MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses.
    Plant Cell Physiol., 2017. 58(10): p. 1752-1763
    [PMID:29017003]
  5. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]