PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.28243s0066.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 328aa    MW: 36467.3 Da    PI: 6.9591
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.28243s0066.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.39e-1686137155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +r++h ++Er+RR+++N+ ++ Lr+l+P++    ++K + a+i+  A+++Ik+L+
  Bostr.28243s0066.1.p  86 QRMTHIAVERNRRRQMNQHLSVLRSLMPQP---FAQKGDQASIVGGAIDFIKELE 137
                           79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-1684151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.00E-1384140No hitNo description
PROSITE profilePS5088816.03185136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1386150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-1386137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-1191142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MTLEALSSNG ILNFLLSETL SPTPFKSLVD LEPLPDNDVI ISNNTVLEIS HQEPPPPRPP  60
PATNRGKKRR RRKPRVCKNE EEAENQRMTH IAVERNRRRQ MNQHLSVLRS LMPQPFAQKG  120
DQASIVGGAI DFIKELEHQL LSLEAQKLQN AKLNQTVTSS TSQDSNGEPE NPHQPSPLSI  180
SQFFLHSYDP SQENRNSSTS SVKTALEDLE VTLIETHANI RILSRRRGFR WSTMAIARPP  240
QLSKLVAALQ SLSLSVLHLS VTTLDTYAIY SISAKVEERC QLSSVDDIAG AVHHMLSIIA  300
EESICCSSMS ELPFDFSLNH TNATHSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16672KKRRRRK
26673KKRRRRKP
36772KRRRRK
46874RRRRKPR
58697RMTHIAVERNRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.28243s0066.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937800.0AB493780.1 Arabidopsis thaliana At5g46690 mRNA for hypothetical protein, partial cds, clone: RAAt5g46690.
GenBankAK2216130.0AK221613.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL07-91-M02.
GenBankBT0256630.0BT025663.1 Arabidopsis thaliana At5g46690 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010494850.10.0PREDICTED: transcription factor bHLH71
SwissprotQ56XR00.0BH071_ARATH; Transcription factor bHLH71
TrEMBLA0A1J3DP670.0A0A1J3DP67_NOCCA; Transcription factor bHLH71
STRINGBostr.28243s0066.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103892535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.11e-172beta HLH protein 71
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]