PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2902s0136.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 208aa    MW: 23547.9 Da    PI: 9.523
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2902s0136.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1081.2e-33151411128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkd 89 
                          lp G+rFhPt++el+ +yL +k+ +++l+  ++i+ +d++ ++P ++p   +++ek+ yfF+k++++ ++ ++r + +  +gyWk  gk+
  Bostr.2902s0136.1.p  15 LPIGYRFHPTEQELILHYLLPKAFASPLPS-SIIPVFDLFFSHPLSFPG--DQKEKQRYFFCKKRREVSSnEQRIKISSGDGYWKPIGKE 101
                          699*************************99.88***************4..4578899******9998861555555889********** PP

                  NAM  90 kevlskkgelvglkktLvfykgrapkge..ktdWvmheyrl 128
                          +++++  g++vg+++tL+fy+ ++p+++  kt+W m ey l
  Bostr.2902s0136.1.p 102 RPIIA-CGKTVGIRRTLAFYETNKPSSNcnKTRWSMTEYCL 141
                          *****.999***********8877765444*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-4010160IPR003441NAC domain
PROSITE profilePS5100537.97915161IPR003441NAC domain
PfamPF023657.9E-2016141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MEVEKRIVVN GGMRLPIGYR FHPTEQELIL HYLLPKAFAS PLPSSIIPVF DLFFSHPLSF  60
PGDQKEKQRY FFCKKRREVS SNEQRIKISS GDGYWKPIGK ERPIIACGKT VGIRRTLAFY  120
ETNKPSSNCN KTRWSMTEYC LAGFASAKVL GEWAVYNVYE RKGSKARKQR KSRDIDDEDI  180
SCSIHFTVGS DHETGPPPPS PPTSADE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-211316213169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2902s0136.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0842160.0AY084216.1 Arabidopsis thaliana clone 100085 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453506.11e-138PREDICTED: NAC domain-containing protein 83-like
TrEMBLD7M5Z01e-132D7M5Z0_ARALL; ANAC084
STRINGBostr.2902s0136.1.p1e-154(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.11e-136NAC domain containing protein 84