PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2902s0344.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family LBD
Protein Properties Length: 233aa    MW: 25533.1 Da    PI: 9.142
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2902s0344.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26089.15.5e-284107199
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C+k+C ++  +     p++q++++ +++k++G++ +++l++a p++ r+++ +sl+ eA+ r+ +P+yG+vg+++++++
  Bostr.2902s0344.1.p   4 SCNGCRVLRKGCSKNCSIRSSLawiesPESQANATVFLAKFYGRTGLVNLINAGPNHLRPAISRSLLHEACGRIVNPIYGSVGLLWSGSW 93 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelallke 99 
                          ql+q++++++l +e
  Bostr.2902s0344.1.p  94 QLCQAAVDAVLKGE 107
                          ******99988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.5013109IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-214102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSKNCS IRSSLAWIES PESQANATVF LAKFYGRTGL VNLINAGPNH  60
LRPAISRSLL HEACGRIVNP IYGSVGLLWS GSWQLCQAAV DAVLKGEAIM PIATDTTANG  120
QGPPIKVYDI RHISKEENSA ANGSRHHRKQ YKTRRAKPEE KSNEASHDSS LSHLSEDESN  180
GKEAANFPVE LELKLGIEPV LSRENHVVVP VKKRRMGVFR TCQVEENTCK EG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2902s0344.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006279210.11e-144LOB domain-containing protein 41
SwissprotQ9M8861e-107LBD41_ARATH; LOB domain-containing protein 41
TrEMBLR0GLP31e-142R0GLP3_9BRAS; Uncharacterized protein
STRINGBostr.2902s0344.1.p1e-172(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.15e-99LOB domain-containing protein 41