PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2902s0345.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Nin-like
Protein Properties Length: 88aa    MW: 10113.2 Da    PI: 10.7821
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2902s0345.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK71.41.2e-222401351
               RWP-RK 13 yFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51
                          F+lpi+ AAk++++c+TvLK+iCR+ G++RWPhRkiks
  Bostr.2902s0345.1.p  2 LFHLPIETAAKQMNLCPTVLKKICRKGGLMRWPHRKIKS 40
                         6*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.846162IPR003035RWP-RK domain
PfamPF020428.6E-20240IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MLFHLPIETA AKQMNLCPTV LKKICRKGGL MRWPHRKIKS RQKKISILKS LLCTAKEGEE  60
QARAEAEIER LLREINRICN DALKNMK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2902s0345.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019087630.13e-40PREDICTED: uncharacterized protein LOC104728818
TrEMBLA0A178UGY41e-33A0A178UGY4_ARATH; Uncharacterized protein
TrEMBLA0A1R7T3I31e-33A0A1R7T3I3_ARATH; RWP-RK domain protein
TrEMBLR0GU109e-35R0GU10_9BRAS; Uncharacterized protein
STRINGBostr.2902s0345.1.p2e-56(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40762342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.21e-08Nin-like family protein