PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2902s0390.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 425aa    MW: 46762.2 Da    PI: 8.134
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2902s0390.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH331e-104671126
                         --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                         ++++ C+++ rtG C++G++C+F+H+
  Bostr.2902s0390.1.p 46 PGEPDCSYYIRTGLCRFGSTCRFNHP 71
                         5789*********************8 PP
2zf-CCCH37.44.4e-1293117327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C f+++tGtCk+G +CkF+H++
  Bostr.2902s0390.1.p  93 QPECEFYLKTGTCKFGVTCKFHHPR 117
                          799********************96 PP
3zf-CCCH37.54e-12139163327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +  C++f+rtG+Ck+G++CkF+H++
  Bostr.2902s0390.1.p 139 EDDCSYFLRTGHCKFGGTCKFNHPQ 163
                          578********************97 PP
4zf-CCCH34.14.8e-11292316125
                          --S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                          +++++C+f+++tG Ck+G  CkF+H
  Bostr.2902s0390.1.p 292 PGQPECQFYMKTGDCKFGTVCKFHH 316
                          5789********************* PP
5zf-CCCH30.65.9e-10339364227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          +++lC f++r+ +Ck+G++CkF H++
  Bostr.2902s0390.1.p 339 GEPLCVFYSRYEICKFGPSCKFDHPM 364
                          689*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.9E-54572IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4554573IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-74771IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-55073IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-45172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.21190118IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-590117IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-993117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-694119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-496117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.305136164IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-5136163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6137164IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9139163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4142162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.244291319IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-5291318IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-7293316IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-5295320IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4297319IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-5337364IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.291337365IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-6339364IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-5340364IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MDFDSRVPIS RESTSLSPLL NQNAMWQMNL GSDETMGDDG FYPERPGEPD CSYYIRTGLC  60
RFGSTCRFNH PHDRKLVIAT ARIKGEYPER IGQPECEFYL KTGTCKFGVT CKFHHPRNKA  120
AIAGRVSVNV LGYPLRPNED DCSYFLRTGH CKFGGTCKFN HPQTQSANLM VSLRGSPVYS  180
ALQSPTGQQS YSWPRTSFVA NPPRWQDPSS FASLVLPQGG VVSVQGWNGY GGQLGSPSPS  240
GSDQNYRNQQ QNDAKESSGS QGGLFSSGFH SGNSVPLGFY ALARENVFPE RPGQPECQFY  300
MKTGDCKFGT VCKFHHRRDR QTPAPDCVLS PVGLPLRSGE PLCVFYSRYE ICKFGPSCKF  360
DHPMRVFTYN NNAVAPSSSS SLHQETAITT QLRNLLVSSS VEATLPSSVS ETTSAKDTTV  420
DAQH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2902s0390.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1388720.0AF138872.1 Arabidopsis thaliana zinc finger protein 3 (ZFN3) mRNA, complete cds.
GenBankAY0846340.0AY084634.1 Arabidopsis thaliana clone 113763 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020878456.10.0zinc finger CCCH domain-containing protein 57
SwissprotQ8L7N80.0C3H57_ARATH; Zinc finger CCCH domain-containing protein 57
TrEMBLR0H7930.0R0H793_9BRAS; Uncharacterized protein
STRINGBostr.2902s0390.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.10.0zinc finger nuclease 3
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Xie W, et al.
    Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach.
    Front Plant Sci, 2015. 6: p. 829
    [PMID:26528302]