PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.29344s0017.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 641aa    MW: 71536.1 Da    PI: 9.7185
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.29344s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.9e-0953105248
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 
                           + W t+E++ l +avk++   +W+++a++++      +  ++ +c++++q+++
  Bostr.29344s0017.1.p  53 QVWGTWEELVLTCAVKRHAFTDWDSVAKEVQarsrssLIASAVNCRLKYQDLK 105
                           68*****************************999999999999******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.59E-548107IPR009057Homeodomain-like
PfamPF002496.5E-853105IPR001005SANT/Myb domain
CDDcd001672.89E-455105No hitNo description
SMARTSM002976.2E-21289398IPR001487Bromodomain
SuperFamilySSF473709.68E-18291396IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.0E-17295422IPR001487Bromodomain
CDDcd043694.93E-15296393No hitNo description
PfamPF004394.2E-11305383IPR001487Bromodomain
PROSITE profilePS5001413.327308379IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MKEEEEEQEE EETVISNGMN DEDDTNNINS YSEFDNNRIG DGDDNCNLNQ ISQVWGTWEE  60
LVLTCAVKRH AFTDWDSVAK EVQARSRSSL IASAVNCRLK YQDLKRRFQD SVDGGEGNSE  120
AAGAAEDEVG EIPWLEQLRS LHVAELRREV QRCDDSILSL QLKVKKLEEE KNGDDGDNKP  180
DLGNRNDETK PAKLNRETTE SDRDDNRSMN ESNSTASVDK IADHDRDKMV LAYPDPDPVY  240
KAAAAEDEER TVSKRSEMSN SGELDESGTS TGPGKRKGQK YRSGGGGGDI KSAGYKSQPL  300
IDIIKLVRSH PRGSVFESRL RSQETKDYKR LIRQHLDIKT IEKKMEKGSY VSSSLSFYRD  360
LKLLFTNAIV FFPPSSSESM AAQELRSLVS NEINKRTGNL GHGIIKAEAG SSVSRQKSSV  420
LPLVACKKNS SSSKKTSPSS SFKQKDEKKS QEVSEEKTVT TFASARSSRR TNKVIAVVAK  480
DTKMGRAKNN NKKQKDMKTD SSSDDDDDEK EETPKTEKKT VAIPSDKKKS VADFLKRIKK  540
NSPQKGKETT SKNQKKSDGN IKKENDYQKK SDGNVKKENS IAKPRELRSN STGKKKAEVE  600
NNNSKSSSKR KQPKETAEAT GKRGRESGKD SKQPKKRSRR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.29344s0017.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0563930.0AY056393.1 Arabidopsis thaliana AT3g60110/T2O9_90 mRNA, complete cds.
GenBankBT0005190.0BT000519.1 Arabidopsis thaliana unknown protein (At3g60110/T2O9_90) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876536.10.0uncharacterized protein LOC9314386
TrEMBLD7LWL10.0D7LWL1_ARALL; Uncharacterized protein
STRINGBostr.29344s0017.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.10.0DNA-binding bromodomain-containing protein