PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.29505s0026.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 371aa    MW: 41831.5 Da    PI: 4.6079
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.29505s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.3e-172267146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                          +g+WT+ Ed ll+d+v ++G g+W+++ ++ g+ R++k+c++rw k
  Bostr.29505s0026.1.p 22 KGPWTQVEDNLLIDYVDKHGDGNWNAVQKHSGLSRCGKSCRLRWKK 67
                          79******************************************86 PP
2Myb_DNA-binding383.9e-1267104746
                           HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            E+++ ++++++lG++ W++ a +++ gRt++++k++w++
  Bostr.29505s0026.1.p  67 KEEKRVIELHALLGNR-WERMAVELP-GRTDNEIKNFWNT 104
                           59**************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.6681773IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-162166IPR009057Homeodomain-like
SuperFamilySSF466899.56E-2221102IPR009057Homeodomain-like
SMARTSM007173.7E-142171IPR001005SANT/Myb domain
PfamPF002497.9E-162267IPR001005SANT/Myb domain
CDDcd001677.23E-122467No hitNo description
CDDcd001671.97E-964106No hitNo description
Gene3DG3DSA:1.10.10.601.2E-1667107IPR009057Homeodomain-like
PROSITE profilePS500906.43570106IPR017877Myb-like domain
SMARTSM007170.02272108IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MVKVCNDSES DDDIAIEKTF TKGPWTQVED NLLIDYVDKH GDGNWNAVQK HSGLSRCGKS  60
CRLRWKKEEK RVIELHALLG NRWERMAVEL PGRTDNEIKN FWNTRLKRLQ RLGLPVYPDE  120
VREQAMNASA SQSGLNTDSL DAHHSQDSLE ANSVAIPELD FAHLPFNQCS SYFQSMLHNG  180
RQTPCFIQPN MYSMIAFPYM STRERSRESE TAFPCTGGYA MNEQSPPLWN YPFVDNIPEL  240
LLPDSHLIAN ATYSPPGPLI QEVEKLELPS FQFDNSLEEP DSCGGQQSNP MPEHEPDNTL  300
VQSLRTDHTP SDRPSSSLYD GLLESIVYGS SVEKRATDTD SESPLFQSSL LGYTELTPAN  360
ENTKGKLFFF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-21201085106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.29505s0026.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880852.20.0transcription factor MYB104
SwissprotQ9SM271e-107MY104_ARATH; Transcription factor MYB104
TrEMBLD7LFF10.0D7LFF1_ARALL; Predicted protein
STRINGBostr.29505s0026.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91982138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.10.0myb domain protein 81
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]