PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.29505s0044.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

FAR1

Protein Properties

Length: 871aa MW: 98470.3 Da PI: 6.6463

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.29505s0044.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	36	2.3e-11	63	134	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+eY++++GF+ + k +g++ r+fvCs + ++++ ++ C a+++++++ ++kw+vtk+++eH+H l Bostr.29505s0044.1.p 63 SFYDEYSRQLGFTSKSLP----KIDGSVSVREFVCSSKRSKRRLAET--------------CAAMVRIEMKGQDKWVVTKFVKEHTHGL 133 5*********876654....56899****988776665555..............************************99 PP FAR1 90 a 90 a Bostr.29505s0044.1.p 134 A 134 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.1E-7	64	134	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.3E-23	266	357	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.398	544	580	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.2E-9	549	578	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.9E-7	555	582	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 871 aa Download sequence Send to blast
MDIHLVEEGV SMRNHGVGDD GDAEPSDCSG PNNIENSLGV QDEIGIAEPC VGIEFSSEKE 60 AKSFYDEYSR QLGFTSKSLP KIDGSVSVRE FVCSSKRSKR RLAETCAAMV RIEMKGQDKW 120 VVTKFVKEHT HGLASPNTLH CLRPRRHFAN SEKSNYQEGV NVPSGMMYVS MDGNRAPLES 180 NNRSARSASK DSNRGVGTVN YGSMATNTKR TIGRDAHNLL EYFKRMQAEN PGFFYAIQLD 240 EDNQMTNVFW ADSRSRFAYT HFGDTVTLDT RYRCNQFRVP FAPFTGVNHH GQSILFGCAL 300 ILDESDTSFI WLFKTFLTAM RDQLPVSLVT DQDRAIQIAV AQVFPGARHC INKWDVLREG 360 QEKLAHVCLA YPSFQVELYN CINFTETIEE FESSWSSIIE KYDLGRHEWL NSLYNARAQW 420 VPVYFRNSFF AAVFPSQGYS GSFFDGYVNQ QTNLPMFFRL YERAMESWFE MEIEADLETV 480 NTPPVLKTPS PMENQAANLF TRKIFGKFQE ELVETFAHTA NRIEDDGTTS TFRVAKFEND 540 NKAYIVTFCY PEMRANCSCQ MFEHCGILCR HVLTVFTVTN ILTLPSHYIL KRWTRNAKSM 600 VELDEHVSEN GHDSLIHRYD HLCREAIKYA EEGAVTAEAY NIALGALREG RKKVSVVRKN 660 IGRAVPPSSH GSGIGSGDKT SLSAADTTPL LWPRQDEMIR RFNLNDGGAR VQSVADLNLP 720 RMAPVSLHRD DGAPENMVAL PCLKSMTWVM ESKNTMPGDR VAVINLKLHD YRKFPSVDME 780 VKFQLSSVTL EPMLRSMAYI SEQLSSPANR VAVINLKLQD TETTTGESEV KFQVSRDTLG 840 AMLRSMAYIR EQLSIVGELQ TEPQAKKQRK *

Sequence ? help Back to Top

Protein Sequence Length: 871 aa Download sequence Send to blast

MDIHLVEEGV SMRNHGVGDD GDAEPSDCSG PNNIENSLGV QDEIGIAEPC VGIEFSSEKE  60
AKSFYDEYSR QLGFTSKSLP KIDGSVSVRE FVCSSKRSKR RLAETCAAMV RIEMKGQDKW  120
VVTKFVKEHT HGLASPNTLH CLRPRRHFAN SEKSNYQEGV NVPSGMMYVS MDGNRAPLES  180
NNRSARSASK DSNRGVGTVN YGSMATNTKR TIGRDAHNLL EYFKRMQAEN PGFFYAIQLD  240
EDNQMTNVFW ADSRSRFAYT HFGDTVTLDT RYRCNQFRVP FAPFTGVNHH GQSILFGCAL  300
ILDESDTSFI WLFKTFLTAM RDQLPVSLVT DQDRAIQIAV AQVFPGARHC INKWDVLREG  360
QEKLAHVCLA YPSFQVELYN CINFTETIEE FESSWSSIIE KYDLGRHEWL NSLYNARAQW  420
VPVYFRNSFF AAVFPSQGYS GSFFDGYVNQ QTNLPMFFRL YERAMESWFE MEIEADLETV  480
NTPPVLKTPS PMENQAANLF TRKIFGKFQE ELVETFAHTA NRIEDDGTTS TFRVAKFEND  540
NKAYIVTFCY PEMRANCSCQ MFEHCGILCR HVLTVFTVTN ILTLPSHYIL KRWTRNAKSM  600
VELDEHVSEN GHDSLIHRYD HLCREAIKYA EEGAVTAEAY NIALGALREG RKKVSVVRKN  660
IGRAVPPSSH GSGIGSGDKT SLSAADTTPL LWPRQDEMIR RFNLNDGGAR VQSVADLNLP  720
RMAPVSLHRD DGAPENMVAL PCLKSMTWVM ESKNTMPGDR VAVINLKLHD YRKFPSVDME  780
VKFQLSSVTL EPMLRSMAYI SEQLSSPANR VAVINLKLQD TETTTGESEV KFQVSRDTLG  840
AMLRSMAYIR EQLSIVGELQ TEPQAKKQRK *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.29505s0044.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK317350	0.0	AK317350.1 Arabidopsis thaliana AT2G27110 mRNA, complete cds, clone: RAFL24-16-J02.
GenBank	AY057491	0.0	AY057491.1 Arabidopsis thaliana At2g27110/T20P8.16 mRNA, complete cds.
GenBank	BT002690	0.0	BT002690.1 Arabidopsis thaliana At2g27110/T20P8.16 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006293662.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	R0HMV5	0.0	R0HMV5_9BRAS; Uncharacterized protein
STRING	Bostr.29505s0044.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Bostr.29505s0044.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]