PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.29827s0034.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GeBP
Protein Properties Length: 429aa    MW: 46633 Da    PI: 4.5804
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.29827s0034.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573117.76.5e-37126224298
                DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqki 88 
                           lfqrlw++eDei lL+G++d+ ++++g  ++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq +
  Bostr.29827s0034.1.p 126 LFQRLWTDEDEIELLRGFLDYiTSHRGNGSHPpDTAPFYEQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQAT 214
                           79*******************9999***88888******************************************************** PP

                DUF573  89 felskkiWgs 98 
                           f++s+kiW++
  Bostr.29827s0034.1.p 215 FDISRKIWNQ 224
                           ********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.4E-34127223IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MASDQRDIVF SVESPDLEDG GGGGGGGGGG GGGGETESDE DVVIPEPNEG EEDDPEYEDL  60
NSPSMVSAIS TAPAAKSSSS TGTVTVALPA GSAVPVASIP SDSDQKWHRM TEIVHQRPPI  120
DDSRRLFQRL WTDEDEIELL RGFLDYITSH RGNGSHPPDT APFYEQIKSK LQLDFNKNQL  180
VEKLRRLKKK YRNVMSKISS GKEVFFKSPH DQATFDISRK IWNQTGKIIG FEDNNVMDFE  240
ETNNVNNTND SSSFNVSIGN ANVDVDLENG LEKKVTMSRK RSRSRSGKID EDKPIIAPCD  300
GPMPNAVNLN ENVAAVGDFS DGRNLGGLIE ETVRNCVSPM IKEMMNGTTG MMMAAMGGFP  360
GCGAHALGVL SPMLMPSMNL GFGGKGVGDE RWRTQQILEL EVYSRRLELV QEQIRDTVNE  420
LKKMPNGG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279284KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.29827s0034.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0076270.0AC007627.3 Genomic Sequence For Arabidopsis thaliana Clone F15F15, Chromosome V, complete sequence.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001318667.10.0DNA-binding storekeeper protein-related transcriptional regulator
RefseqNP_198156.10.0DNA-binding storekeeper protein-related transcriptional regulator
SwissprotF4K5T40.0STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLR0H7660.0R0H766_9BRAS; Uncharacterized protein
STRINGBostr.29827s0034.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.10.0DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]