PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.29827s0147.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 122aa    MW: 13930.7 Da    PI: 9.0661
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.29827s0147.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.48.9e-075779527
                          --SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                          lC++f  + +C++G++C++ H++
  Bostr.29827s0147.1.p 57 LCNRFITSNFCPFGNSCRYFHPK 79
                          8********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004514.8E-4338IPR003604Zinc finger, U1-type
SuperFamilySSF576676.55E-13455No hitNo description
PfamPF062206.8E-9537IPR013085Zinc finger, U1-C type
PROSITE profilePS5010312.3615280IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-65479IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-55778IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MPSGKYYCDY CDKEFQDTQV ARKRHLQSKP HLRAKALWYS SPSDLNLQVS NFATKGLCNR  60
FITSNFCPFG NSCRYFHPKN IPGSTGFTNN TQPHADMLNQ HIEGSTLNQH MRSCFLPFNF  120
S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.29827s0147.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0007327e-45AJ000732.1 Arabidopsis thaliana ASKalpha gene.
GenBankCP0026887e-45CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankF2P167e-45AF007270.1 Arabidopsis thaliana BAC F2P16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010421530.19e-68PREDICTED: zinc finger CCCH domain-containing protein 3-like
SwissprotQ0JP115e-22C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLD7M5C73e-65D7M5C7_ARALL; Uncharacterized protein
STRINGBostr.29827s0147.1.p2e-87(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104742225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.11e-64C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]