PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.29827s0294.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family TALE
Protein Properties Length: 434aa    MW: 47676.9 Da    PI: 6.1619
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.29827s0294.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41e-073704032154
                           HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           k +yp++e++++L +++gL+ +q+ +WF N+R +
  Bostr.29827s0294.1.p 370 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 403
                           469*****************************87 PP
2ELK28.82.8e-10324345122
                   ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                           ELKh+L+++Y+++++++++E++
  Bostr.29827s0294.1.p 324 ELKHELKQGYKEKIVDIREEIL 345
                           9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-19159203IPR005540KNOX1
PfamPF037901.1E-17162202IPR005540KNOX1
SMARTSM012561.0E-29215270IPR005541KNOX2
PfamPF037912.8E-21219269IPR005541KNOX2
PfamPF037891.0E-6324345IPR005539ELK domain
SMARTSM011886.1E-4324345IPR005539ELK domain
PROSITE profilePS512139.969324344IPR005539ELK domain
PROSITE profilePS5007111.726344407IPR001356Homeobox domain
SMARTSM003892.4E-11346411IPR001356Homeobox domain
SuperFamilySSF466895.13E-16346410IPR009057Homeodomain-like
CDDcd000863.94E-12347408No hitNo description
Gene3DG3DSA:1.10.10.603.7E-25351408IPR009057Homeodomain-like
PfamPF059201.2E-17364403IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPPP PPPQHFQEAP PPNWLNTALL RSSDNNNNNF  60
LNLHTATANT TTASSSDSPS SAAAAAAAAN QWLSRSSSFL QRNNNNNATA SAVVGDGIDD  120
VTGGTETMIG GEMKSSGGDN KNDVGGAAAA DGVVSWQNAR HKAEILSHPL YEQLLSAHVA  180
CLRIATPVDQ LPRIDAQLAQ SQHVVAKYSA LGAADQGLVG DDKELDQFMT HYVLLLCSFK  240
EQLQQHVRVH AMEAVMACWE IEQSLQSLTG VSPGEGMGAT MSDDEDEQVE SDANMFDGSV  300
DVLGFGPLIP TESERSLMER VRQELKHELK QGYKEKIVDI REEILRKRRA GKLPGDTTSV  360
LKAWWQSHSK WPYPTEEDKA RLVQETGLQL KQINNWFINQ RKRNWHSNPS SSTVLKNKRK  420
SNAGDNSGRE RFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12347411872Homeobox protein PKNOX1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.29827s0294.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX923920.0X92392.1 A.thaliana mRNA for KNAT3 homeobox protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_197904.10.0homeobox protein knotted-1-like 3
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A178U9D10.0A0A178U9D1_ARATH; KNAT3
STRINGBostr.29827s0294.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.10.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]