PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2983s0058.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 299aa    MW: 33614.3 Da    PI: 4.2633
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2983s0058.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.91.4e-061762141255
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          R +++ +++  L++l+ +      +K + a++L +AveYIk Lq
  Bostr.2983s0058.1.p 176 RKEKLGDRITALQQLVSPF-----GKTDTASVLNEAVEYIKFLQ 214
                          677888999*******998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.277164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-11174222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-7174217No hitNo description
SMARTSM003536.6E-4175219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-10178221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MTEEFEIAGI PTGTWWSSPT NTAAIFSGYS LPRSTEISLD VTNFGWQDNE NKIIDHNDGF  60
MNMHSSFFEG LFDPNEQLLS DSWPNTTIPN TKSELLESFP LYDNMFLIDS EAESFLDNEI  120
RNHKSKDQIT QDCKNITSKR SEKPEELEEN SDEYSPRLLK RPRLETLSPL PSFKVRKEKL  180
GDRITALQQL VSPFGKTDTA SVLNEAVEYI KFLQEQVTVL SNPDQNTIGS VQQQQSSDKK  240
SINTQEEEEC SSRRQVDLAS RGLCLMPISA SYPVAAAAAS AAEMNTSDFW NLPFCVNL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2983s0058.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0154460.0BT015446.1 Arabidopsis thaliana At4g05170 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019084666.11e-177PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH114-like
SwissprotQ9M0X81e-161BH114_ARATH; Transcription factor bHLH114
TrEMBLA0A087GQR81e-169A0A087GQR8_ARAAL; Uncharacterized protein
STRINGBostr.2983s0058.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144281719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05170.11e-114bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]