PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2983s0191.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 406aa    MW: 44876.5 Da    PI: 8.8956
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2983s0191.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-0583105123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k F r  nL+ H r H
  Bostr.2983s0191.1.p  83 FVCEICNKGFQRDQNLQLHRRGH 105
                          89*******************88 PP
2zf-C2H212.80.00035160182123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H + +
  Bostr.2983s0191.1.p 160 WKCEKCSKFYAVQSDWKAHTKIC 182
                          58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.82E-682105No hitNo description
Gene3DG3DSA:3.30.160.601.3E-582105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01783105IPR015880Zinc finger, C2H2-like
PfamPF121716.2E-583105IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94983105IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
SMARTSM00355310125155IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.82E-6155180No hitNo description
SMARTSM00355180160180IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDMFSSHSLS YKLSSLSTEA SASSGNTLST IQDFSGFNNV ISSLCTHTET HKTKKRRGLP  60
GNPDPNAEVI ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQKNSKEQQ  120
RKKVYVCPEI NCVHHHPSRA LGDLTGIKKH FCRKHGEKKW KCEKCSKFYA VQSDWKAHTK  180
ICGTREYRCD CGTLFSRKDS FITHRAFCDA LAEESARMLS TSSSNLTNPN PNFQDHHFMV  240
DKSSPLIFTS PLYVEPSSHS TAALSTSSMA ALSATALLQK ATALSSSAFG GGGQTRSIGH  300
HRNLTNVNEL LGVDRVMMTS SSSSEYDQLV VDGFTSTWQK ADRLTRDFLG LTGHGVHVSV  360
RPGDMLEYAG GVAFPMSAYD TETHDHELSS FQKAYDLGFS GPHTM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-37156225372Zinc finger protein JACKDAW
5b3h_F9e-37156225372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109122KLKQKNSKEQQRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2983s0191.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936720.0AB493672.1 Arabidopsis thaliana At4g02670 mRNA for hypothetical protein, partial cds, clone: RAAt4g02670.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001328388.10.0indeterminate(ID)-domain 12
SwissprotO227590.0IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A178V4W80.0A0A178V4W8_ARATH; Indeterminate(ID)-domain 12
TrEMBLA0A384KUL20.0A0A384KUL2_ARATH; IDD12
STRINGBostr.2983s0191.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.10.0indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]